View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16025_low_6 (Length: 348)
Name: NF16025_low_6
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16025_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 30667179 - 30667496
Alignment:
| Q |
19 |
atgaagcatggaaactgacatgggcacatcgacgacacattgctgtaacttcttcgagtgacttatcattctctgagatttcaattctgaattctatgtt |
118 |
Q |
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| T |
30667179 |
atgaaacatggaaactgacatgggcacgtcgacgacacattgctgtaacttcttcgagtgacttatcattctctgagaattcaattctgaattctatgtt |
30667278 |
T |
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| Q |
119 |
tagattctctgaaatcttata-ccttgcttcaaggttctgtaatacgactagtggacgaataagttaaaaagaaggccaaatcttcatggtagcgaatta |
217 |
Q |
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| T |
30667279 |
tagattctctgaaatattatagccttgcttcaaggttctgtaatacgactagtggacgaataagttaaaaagaaggccaaatcttcatggtagcgaatta |
30667378 |
T |
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| Q |
218 |
gttgtaacaatacatgtgaggagatgtatgtagtgagtgcgcaggggatatatatcatggtctaaggtagggtaaagtggtcatggaattggtgtaatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30667379 |
gttgtaacaatacatgtgaggagatgtatgtagtgagtgcgcaggggatatatatcatggtctaaggtagggtaaagttgtcatggaattggtgtaatgt |
30667478 |
T |
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| Q |
318 |
tctaatttctcttcccct |
335 |
Q |
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|||||||||||||||||| |
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| T |
30667479 |
tctaatttctcttcccct |
30667496 |
T |
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