View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16025_low_7 (Length: 293)
Name: NF16025_low_7
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16025_low_7 |
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| [»] scaffold1528 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 2467929 - 2468204
Alignment:
| Q |
1 |
acttataaagtaaagtgcaaaatgtaaagagatacgggaagaagaaagacacatgaaattatcttagtttactccacaatttataactacttcagtcctt |
100 |
Q |
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| T |
2467929 |
acttataaagtaaagtgcaaaatgtaaagagatacgggaagaagaaagacacatacaattatcctagttcactccacaatctatagctacttcagtcctt |
2468028 |
T |
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| Q |
101 |
tcacacttgaaggatttttcactataatatacctgattaaatatttccctaggactcatagtcctataattcttttgcctcaaactagaggaaaacttac |
200 |
Q |
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| T |
2468029 |
tcacacttaaaggatttttcactataatatacctgattaaatatttccctaggactcatagacctagaattctttttcctcaaactagaggaaaacttac |
2468128 |
T |
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| Q |
201 |
aataaaaattgttcgagcacaatacaacattttgtatttttctatactttgatttttctagacaaggcttgtgttt |
276 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468129 |
aataaaaattgttcgaccacaccacaacattttgtatttttctatactttgatttttctagacaaggcttgtgttt |
2468204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1528 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1528
Description:
Target: scaffold1528; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 443 - 356
Alignment:
| Q |
100 |
ttcacacttgaaggatttttcactataatatacctgattaaatatttccctaggactcatagtcctataattcttttgcctcaaacta |
187 |
Q |
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|||||||| |||||| ||||||||||||| |||||||||| ||||| ||| ||| | ||||| || | ||||||||||||||||| |
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| T |
443 |
ttcacactcgaaggacttttcactataatttacctgattacgaatttcactaagacacctagtcttagatgtcttttgcctcaaacta |
356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 17753719 - 17753632
Alignment:
| Q |
100 |
ttcacacttgaaggatttttcactataatatacctgattaaatatttccctaggactcatagtcctataattcttttgcctcaaacta |
187 |
Q |
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|||||||| |||||| ||||||||||||| |||||||||| ||||| ||| ||| | ||||| || | ||||||||||||||||| |
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| T |
17753719 |
ttcacactcgaaggacttttcactataatttacctgattacgaatttcactaagacacctagtcttagatgtcttttgcctcaaacta |
17753632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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