View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16025_low_8 (Length: 284)

Name: NF16025_low_8
Description: NF16025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16025_low_8
NF16025_low_8
[»] chr3 (5 HSPs)
chr3 (10-284)||(10464727-10465001)
chr3 (230-284)||(20080076-20080131)
chr3 (228-284)||(49167751-49167808)
chr3 (225-284)||(30863089-30863149)
chr3 (256-284)||(40367638-40367666)
[»] chr7 (5 HSPs)
chr7 (230-284)||(3343343-3343398)
chr7 (230-284)||(46773655-46773710)
chr7 (254-284)||(30061309-30061339)
chr7 (230-279)||(31844623-31844672)
chr7 (224-284)||(34978293-34978354)
[»] chr5 (6 HSPs)
chr5 (215-284)||(32912026-32912096)
chr5 (230-284)||(19839999-19840054)
chr5 (230-284)||(7076582-7076636)
chr5 (230-284)||(18660762-18660816)
chr5 (230-284)||(22649675-22649729)
chr5 (224-284)||(6517709-6517770)
[»] chr8 (5 HSPs)
chr8 (230-284)||(5864206-5864261)
chr8 (230-284)||(41600312-41600367)
chr8 (230-284)||(45529259-45529314)
chr8 (227-284)||(44825443-44825500)
chr8 (230-281)||(12783769-12783821)
[»] chr6 (6 HSPs)
chr6 (230-284)||(2689077-2689132)
chr6 (226-284)||(5522651-5522710)
chr6 (230-284)||(24842371-24842426)
chr6 (230-284)||(5570347-5570401)
chr6 (225-284)||(23628358-23628418)
chr6 (256-284)||(25142564-25142592)
[»] chr4 (5 HSPs)
chr4 (230-284)||(50050641-50050695)
chr4 (225-284)||(7627846-7627906)
chr4 (230-284)||(40348797-40348851)
chr4 (225-284)||(14443196-14443256)
chr4 (225-284)||(47240815-47240875)
[»] chr2 (6 HSPs)
chr2 (230-284)||(30546382-30546437)
chr2 (230-284)||(7648395-7648449)
chr2 (230-284)||(22888835-22888889)
chr2 (230-284)||(41195587-41195641)
chr2 (230-284)||(7552557-7552613)
chr2 (229-284)||(32869828-32869884)
[»] chr1 (5 HSPs)
chr1 (230-284)||(15083064-15083118)
chr1 (230-283)||(26967213-26967267)
chr1 (230-284)||(46172420-46172474)
chr1 (231-284)||(47215742-47215796)
chr1 (251-284)||(52267228-52267261)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 284
Target Start/End: Original strand, 10464727 - 10465001
Alignment:
Q  10 attattctaaaaaacacataatgcagccatgtaaattgaccaattaacttgctgtcctcttctgtccacgtgtcaacctaaccaagagggctaatagaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10464727 attattctaaaaaacacataatgcagccatgtaaattgaccaattaacttgctgtcctcttctgtccacgtgtcaacctaaccaagagggctaatagaca 10464826  T
Q  110 tcaacaatgagactatggatcgctgataccgtagatcatgccatccctggtttaagcatatgaagacacctcaaaaatctactttctagcgtcatcaact 209  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10464827 tgaacaatgagactatggatcgctgataccgtagatcatgccatccctggtttaagcatatgaagacacctcaaaaatctactttctagcgtcatcaact 10464926  T
Q  210 acagagctaaatttaatgaaaaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10464927 acagagctaaatttaatgaaaaatgatatttgaacattcatcaatgaaaatttttgtgacaattttctctctcat 10465001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 20080076 - 20080131
Alignment:
Q  230 aaatgatatttgaacattcatc-aatgacaatttttgtgacaattttctctctcat 284  Q
    ||||| ||||||||||| |||  |||||||||||||||||||| ||||||||||||    
T  20080076 aaatggtatttgaacatccatttaatgacaatttttgtgacaactttctctctcat 20080131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 49167751 - 49167808
Alignment:
Q  228 aaaaatgatatttgaacattcatca-atgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||||| |||   ||||||| ||||||||||| ||||||||||||    
T  49167751 aaaaatgatatttgaacatccatttgatgacaacttttgtgacaactttctctctcat 49167808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 30863149 - 30863089
Alignment:
Q  225 atgaaaaatgatatttgaacattcatca-atgacaatttttgtgacaattttctctctcat 284  Q
    |||| ||||||||||||||||| |||   |||| |||||||||||||| ||||||||||||    
T  30863149 atgagaaatgatatttgaacatccatttgatgataatttttgtgacaactttctctctcat 30863089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 40367638 - 40367666
Alignment:
Q  256 acaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||||||||||||||||    
T  40367638 acaatttttgtgacaattttctctctcat 40367666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 3343398 - 3343343
Alignment:
Q  230 aaatgatatttgaacattcatca-atgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  3343398 aaatgatatttgaacattcattttatgacaatttttgtgacaattttctctctcat 3343343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 46773710 - 46773655
Alignment:
Q  230 aaatgatatttgaacattcat-caatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||| ||| || ||||||||||||  |||||||||||||||||    
T  46773710 aaatgatatttgaacatccattcagtgacaatttttgcaacaattttctctctcat 46773655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 284
Target Start/End: Original strand, 30061309 - 30061339
Alignment:
Q  254 tgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||||||||||||||||||    
T  30061309 tgacaatttttgtgacaattttctctctcat 30061339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 31844672 - 31844623
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctct 279  Q
    ||||||||||||||||| |||   ||||||||||| ||||||||||||||    
T  31844672 aaatgatatttgaacatccatttgtgacaatttttatgacaattttctct 31844623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 34978293 - 34978354
Alignment:
Q  224 aatgaaaaatgatatttgaacattca-tcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||| |||||||||||||||| ||| |   |||||||||||||||||| ||||||||||||    
T  34978293 aatgagaaatgatatttgaacaatcactttttgacaatttttgtgacaactttctctctcat 34978354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 32912026 - 32912096
Alignment:
Q  215 gctaaatttaatgaaaaatgatatttgaacattcatca-atgacaatttttgtgacaattttctctctcat 284  Q
    |||| |||||| || |||||||||||||||||||||   |||| |||||||||||||||||||||||||||    
T  32912026 gctatatttaaagagaaatgatatttgaacattcattttatgataatttttgtgacaattttctctctcat 32912096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 19840054 - 19839999
Alignment:
Q  230 aaatgatatttgaacattcatca-atgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||||||||   ||||||||||||||||||| ||||||||||||    
T  19840054 aaatgatatttgaacattcattttatgacaatttttgtgacaactttctctctcat 19839999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 7076636 - 7076582
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||| ||||   | | |||||||||||||||||||||||||||    
T  7076636 aaatgatatttgaacaatcattttttataatttttgtgacaattttctctctcat 7076582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 18660762 - 18660816
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||  |||   |||||| ||||||||||||||||||||||||    
T  18660762 aaatgatatttgaacaaccatttttgacaacttttgtgacaattttctctctcat 18660816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 22649729 - 22649675
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||  |||   | |||||||||||||||||||||||||||||    
T  22649729 aaatgatatttgaacaaccattttttacaatttttgtgacaattttctctctcat 22649675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 6517709 - 6517770
Alignment:
Q  224 aatgaaaaatgatatttgaacattcatca-atgacaatttttgtgacaattttctctctcat 284  Q
    ||||| ||||||||||||||||| |||   ||||||| ||||||||||| ||||||||||||    
T  6517709 aatgagaaatgatatttgaacatccattttatgacaacttttgtgacaactttctctctcat 6517770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 5864206 - 5864261
Alignment:
Q  230 aaatgatatttgaacattcatcaa-tgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||    
T  5864206 aaatgatatttgaacattcatctagtgataatttttgtaacaattttctctctcat 5864261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 41600312 - 41600367
Alignment:
Q  230 aaatgatatttgaacattcatcaat-gacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||||||||  || ||||| ||||||||||| ||||||||||||    
T  41600312 aaatgatatttgaacattcatttattgacaacttttgtgacaactttctctctcat 41600367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 45529314 - 45529259
Alignment:
Q  230 aaatgatatttgaacattcatcaa-tgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||||||||  | ||||||||||||| |||| ||||||||||||    
T  45529314 aaatgatatttgaacattcatttagtgacaatttttgtaacaactttctctctcat 45529259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 44825443 - 44825500
Alignment:
Q  227 gaaaaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||| ||||||| ||||   |||||| ||||||||||||||| ||||||||    
T  44825443 gaaaaatgataattgaacaatcatttttgacaacttttgtgacaattttatctctcat 44825500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 12783769 - 12783821
Alignment:
Q  230 aaatgatatttgaacattcatc-aatgacaatttttgtgacaattttctctct 281  Q
    ||||||||||||||||| |||  |||||||||||||||||||| ||| |||||    
T  12783769 aaatgatatttgaacatccatttaatgacaatttttgtgacaactttatctct 12783821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 2689132 - 2689077
Alignment:
Q  230 aaatgatatttgaacattcatc-aatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||| |||  |||||||||||||||||||| ||||||||||||    
T  2689132 aaatgatatttgaacatccatttaatgacaatttttgtgacaactttctctctcat 2689077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 5522710 - 5522651
Alignment:
Q  226 tgaaaaatgatatttgaacattcatc-aatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||||||||||||   ||| |||||||||||||| ||| ||||||||    
T  5522710 tgaaaaatgatatttgaacattcatcttttgataatttttgtgacaactttatctctcat 5522651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 24842371 - 24842426
Alignment:
Q  230 aaatgatatttgaacattca-tcaatgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||||||| | |||||||| ||||||||||  ||||||||||||    
T  24842371 aaatgatatttgaacattcatttaatgacaacttttgtgacagctttctctctcat 24842426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 5570401 - 5570347
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||  |||   | |||||||||||||||||||||||||||||    
T  5570401 aaatgatatttgaacaaccattttttacaatttttgtgacaattttctctctcat 5570347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 23628358 - 23628418
Alignment:
Q  225 atgaaaaatgatatttgaacattcatc-aatgacaatttttgtgacaattttctctctcat 284  Q
    |||| |||||||||||||| || |||  ||||| |||||||||||||||||||| ||||||    
T  23628358 atgagaaatgatatttgaatatccatttaatgataatttttgtgacaattttctatctcat 23628418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 25142592 - 25142564
Alignment:
Q  256 acaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||||||||||||||||    
T  25142592 acaatttttgtgacaattttctctctcat 25142564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 50050641 - 50050695
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||| | ||   |||||||||||||||||||||||||||||||    
T  50050641 aaatgatatttgaacaattatttttgacaatttttgtgacaattttctctctcat 50050695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 7627846 - 7627906
Alignment:
Q  225 atgaaaaatgatatttgaacattcatc-aatgacaatttttgtgacaattttctctctcat 284  Q
    |||| |||||||||||||| ||||||  ||||| ||||||||||| |||||||||||||||    
T  7627846 atgagaaatgatatttgaatattcatttaatgataatttttgtgataattttctctctcat 7627906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 40348797 - 40348851
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||||| ||||   | | |||||||||||||||||||||||||||    
T  40348797 aaatgatatttgaacaatcattttttataatttttgtgacaattttctctctcat 40348851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 14443196 - 14443256
Alignment:
Q  225 atgaaaaatgatatttgaacattcatcaat-gacaatttttgtgacaattttctctctcat 284  Q
    |||| |||||||||||||||| ||||   | ||||| ||||||||||||||||||||||||    
T  14443196 atgagaaatgatatttgaacaatcattttttgacaacttttgtgacaattttctctctcat 14443256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 47240815 - 47240875
Alignment:
Q  225 atgaaaaatgatatttgaacattca-tcaatgacaatttttgtgacaattttctctctcat 284  Q
    |||| |||||||||||||||||||| | | ||||||||||||  |||| ||||||||||||    
T  47240815 atgataaatgatatttgaacattcatttattgacaatttttgcaacaactttctctctcat 47240875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 30546437 - 30546382
Alignment:
Q  230 aaatgatatttgaacattcatc-aatgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||| || |||  ||||| |||||||||||||||||||||||||||    
T  30546437 aaatgatatttgaatatccatttaatgataatttttgtgacaattttctctctcat 30546382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 7648395 - 7648449
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||| |||   |||||||||||||||||| ||| ||||||||    
T  7648395 aaatgatatttgaacatccatttgtgacaatttttgtgacaactttttctctcat 7648449  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 22888889 - 22888835
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||  |||   |||||||||||||||||| ||||||||||||    
T  22888889 aaatgatatttgaacaaccatttttgacaatttttgtgacaactttctctctcat 22888835  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 41195587 - 41195641
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    |||||||||||||| | ||||   |||||| ||||||||||||||||||||||||    
T  41195587 aaatgatatttgaataatcatttttgacaacttttgtgacaattttctctctcat 41195641  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 7552557 - 7552613
Alignment:
Q  230 aaatgatatttgaacattca--tcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||||||  | |||||||| |||||| |||| ||||||||||||    
T  7552557 aaatgatatttgaacattcattttaatgacaacttttgtaacaactttctctctcat 7552613  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 32869828 - 32869884
Alignment:
Q  229 aaaatgatatttgaacattca-tcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||||||| |  |||| |||||||||||||| ||||||| ||||    
T  32869828 aaaatgatatttgaacattcattttatgataatttttgtgacaactttctctttcat 32869884  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 15083118 - 15083064
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||  |||   |||||| ||||||||||||||||||||||||    
T  15083118 aaatgatatttgaacaaccatttttgacaacttttgtgacaattttctctctcat 15083064  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 26967213 - 26967267
Alignment:
Q  230 aaatgatatttgaacattcatc-aatgacaatttttgtgacaattttctctctca 283  Q
    |||||||||||||||||| ||  |||||||| ||||||||||| |||||||||||    
T  26967213 aaatgatatttgaacattaatttaatgacaacttttgtgacaactttctctctca 26967267  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 46172474 - 46172420
Alignment:
Q  230 aaatgatatttgaacattcatcaatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||| ||| | |||||| |||||| | |||||||||||||||    
T  46172474 aaatgatatttgaacatccattagtgacaacttttgtaataattttctctctcat 46172420  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 47215796 - 47215742
Alignment:
Q  231 aatgatatttgaacattcatc-aatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||  ||  |||||||| ||||||||||||||||||||||||    
T  47215796 aatgatatttgaacatctatataatgacaacttttgtgacaattttctctctcat 47215742  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 52267228 - 52267261
Alignment:
Q  251 caatgacaatttttgtgacaattttctctctcat 284  Q
    ||||||||||||||||||||| ||||||||||||    
T  52267228 caatgacaatttttgtgacaactttctctctcat 52267261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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