View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16026_high_1 (Length: 740)

Name: NF16026_high_1
Description: NF16026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16026_high_1
NF16026_high_1
[»] chr5 (1 HSPs)
chr5 (12-723)||(8202385-8203099)


Alignment Details
Target: chr5 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 12 - 723
Target Start/End: Complemental strand, 8203099 - 8202385
Alignment:
Q  12 ccaagaatataaacttatagataataaaatacagtcatattttgtttttcagaccacacttcttgcaaataaaacatcataagctagcttgctaattctc 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8203099 ccaacaatataaacttatagataataaaatacagtcatattttgtttttcagaccacacttcttgcaaataaaacatcataagctagcttgctaattctc 8203000  T
Q  112 tacctagatggagagtttggaaccaacttttggtttaatacgagattacaaactaattaaagcttaaataacaacttaacaagtgctagct----gctta 207  Q
    |||||||||||||||| ||||||||||||| ||||||||  || |||||||||||||||||||| ||||||||||||||||||||||||||    |||||    
T  8202999 tacctagatggagagtatggaaccaactttaggtttaatgtgatattacaaactaattaaagctcaaataacaacttaacaagtgctagctagctgctta 8202900  T
Q  208 attaatttacaatgtctaattcaagcaaatttaacatgacattggttccattaattcagctgctcaaccaaggcgcaaatcgtcatttttgtaaccttct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8202899 attaatttacaatgtctaattcaagcaaatttaacatgacattggttccattaattcagttgctcaaccaaggcgcaaatcgtcatttttgtaaccttct 8202800  T
Q  308 tctccatggtgatgaggaagattcagatgagaatggtgctgacagaatgcatacagagtggaagcaccattggccaatgcaaccgctgattcctcgtctc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8202799 tctccatggtgatgaggaagattcagatgagaatggtgctgacagaatgcatacagagtggaagcaccattggccaatgcaactgctgattcctcgtctc 8202700  T
Q  408 cttcgtcgtggaaaagaaattgtggatggatcacacatttttccttcttattgttattccattcacgcaataaaaggaaacaaaatcatttcctcttctc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8202699 cttcgtcgtggaaaagaaattgtggatggatcacacatttttccttcttattgttattccattcacgcaataaaaggaaacaaaatcatttcctcttctc 8202600  T
Q  508 tatatgtaaatcatttacaatcacaacaaaatgcagttttctatctttttacttactnnnnnnngttgaaataacgactgaaattagagacagatttaat 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  8202599 tatatgtaaatcatttacaatcacaacaaaatgcagttttctatctttttacttactaaaaaaagttgaaataacgactgaaattagagacagatttaat 8202500  T
Q  608 aaaagtggtcactaaatttgacgtctctaacacttagatgcggaattagagacggattttgnnnnnnnnctgtctttaaatttatgttgtgtttcagctt 707  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||| |    
T  8202499 aaaagaggtcactaaatttgacgtctctaacacttagatgcggaattagagacggattttgttttttttctgtctttaaatttatgttgtgtttcagc-t 8202401  T
Q  708 ttttctagtagtatat 723  Q
    ||||||||||||||||    
T  8202400 ttttctagtagtatat 8202385  T

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