View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16026_low_10 (Length: 270)

Name: NF16026_low_10
Description: NF16026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16026_low_10
NF16026_low_10
[»] chr7 (1 HSPs)
chr7 (183-245)||(17927758-17927820)
[»] chr6 (3 HSPs)
chr6 (169-245)||(13166651-13166727)
chr6 (187-245)||(10740797-10740855)
chr6 (186-244)||(9401822-9401880)
[»] chr2 (1 HSPs)
chr2 (186-235)||(30385430-30385479)
[»] chr4 (2 HSPs)
chr4 (186-245)||(24224764-24224824)
chr4 (15-93)||(24224891-24224966)


Alignment Details
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 17927758 - 17927820
Alignment:
Q  183 aagaaattaaaccaagtcaatcacacaacattcccaaattttagggaactcaatagcggaagc 245  Q
    ||||||||||||||| |||||||||||||||||||||| ||| |  |||||||||||||||||    
T  17927758 aagaaattaaaccaaatcaatcacacaacattcccaaacttttgaaaactcaatagcggaagc 17927820  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 13166727 - 13166651
Alignment:
Q  169 caaaagaccaaggcaagaaattaaaccaagtcaatcacacaacattcccaaattttagggaactcaatagcggaagc 245  Q
    |||||||||||  | | |||||||||||| |||||||||||| ||||||||||||| |||||| ||| |||||||||    
T  13166727 caaaagaccaacactataaattaaaccaaatcaatcacacaaaattcccaaatttttgggaacacaaaagcggaagc 13166651  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 10740855 - 10740797
Alignment:
Q  187 aattaaaccaagtcaatcacacaacattcccaaattttagggaactcaatagcggaagc 245  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||||||||  ||||||||    
T  10740855 aattaaaccaaatcaatcacacaacattcccaaacttttgggaactcaactgcggaagc 10740797  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 9401880 - 9401822
Alignment:
Q  186 aaattaaaccaagtcaatcacacaacattcccaaattttagggaactcaatagcggaag 244  Q
    |||| ||||||| |||||||||||| ||||||||||||| |||||||||| | ||||||    
T  9401880 aaatcaaaccaaatcaatcacacaatattcccaaatttttgggaactcaacaacggaag 9401822  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 30385479 - 30385430
Alignment:
Q  186 aaattaaaccaagtcaatcacacaacattcccaaattttagggaactcaa 235  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  30385479 aaattaaaccaagtcaatcacacaacattgccaaaattttgggaactcaa 30385430  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 24224824 - 24224764
Alignment:
Q  186 aaattaaaccaagtcaatcacacaacattcc-caaattttagggaactcaatagcggaagc 245  Q
    |||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||| ||||    
T  24224824 aaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcgaaagc 24224764  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 24224966 - 24224891
Alignment:
Q  15 agtggaacggtgcaagttaccatatcaaagtaaacatcatgttaccaatttctctaatcttttgtttcttccaagcaat 93  Q
    ||||||| | ||||| ||||||| || ||| |||||||||||| |||||||||||||   ||||||||| |||||||||    
T  24224966 agtggaatgttgcaaattaccatttcgaagcaaacatcatgttcccaatttctctaa---tttgtttctaccaagcaat 24224891  T

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