View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16026_low_11 (Length: 237)
Name: NF16026_low_11
Description: NF16026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16026_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32783636 - 32783415
Alignment:
| Q |
1 |
tgttttgcttgcttctctctctttcaaaaggactttatatttactaatatggatgttagcgtgctttgggaggcgcttggtgttcttctgccaccaaaca |
100 |
Q |
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|||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
32783636 |
tgttttacttgcttctccctctttcaaaaggactttacatttactaatatggatgttaggatgctttgggaggtgcttggtgttcttctgccaccaaaca |
32783537 |
T |
|
| Q |
101 |
ggggtaaaaccttggaaggtactagcattcagttactgcaagagctttggtcaagatcatttcttcaagattttatagactttggtggtggta-ttgtac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
32783536 |
ggggtaaaaccttggaaggtactagcattcagttactgcaagagctttggtcaagatcatttcttcaagattttgtagactttggtggtggtatttgtac |
32783437 |
T |
|
| Q |
200 |
atttaaattgcatgatttagtg |
221 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
32783436 |
atttaaattgcatgatttagtg |
32783415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 49341255 - 49341476
Alignment:
| Q |
1 |
tgttttgcttgcttctctctctttcaaaaggactttatatttactaatatggatgttagcgtgctttgggaggcgcttggtgttcttctgccaccaaaca |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||| ||||| |||| | |||||||| ||||| |||| ||| ||||| |||||| |||||||||| |
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| T |
49341255 |
tgttttgcttgcttctctctctttgaaaagtactttccatttattaattttgatgttagtgtgctatgggtggcatttggttttcttccaccaccaaaca |
49341354 |
T |
|
| Q |
101 |
ggggtaaaaccttggaaggtactagcattcagttactgcaagagctttggtcaagatcatttcttcaagattttatagactttggtggtgg-tattgtac |
199 |
Q |
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||||||||||||||||| || |||||||||||| ||| | || ||| ||| ||||||||| ||||||||||| |||||||||||||||| | |||| |
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| T |
49341355 |
tgggtaaaaccttggaagatattagcattcagtttctgtacgaccttcagtctagatcatttattcaagattttgtagactttggtggtggtttttgtgg |
49341454 |
T |
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| Q |
200 |
atttaaattgcatgatttagtg |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
49341455 |
atttaaattgcatgatttagtg |
49341476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 49352633 - 49352850
Alignment:
| Q |
1 |
tgttttgcttgcttctctctctttcaaaaggactttatatttactaatatggatgttagcgtgctttgggaggcgcttggtgttcttctgccaccaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||| ||||| | ||||||| ||||| |||| ||| |||||| |||||| |||||||| | |
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| T |
49352633 |
tgttttgcttgcttctctctctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagta |
49352732 |
T |
|
| Q |
101 |
ggggtaaaaccttggaaggtactagcattcagttactgcaagagctttggtcaagatcatttcttcaagattttatagactttggtggtgg-tattgtac |
199 |
Q |
| |
|
|||||||||||||||||| || | ||||||||| || | |||||| ||| ||||||||||||||| |||||| ||||||||||||||| | |||| |
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| T |
49352733 |
ggggtaaaaccttggaagatatgaacattcagtttgtgtacgagcttcagtctagatcatttcttcaaaattttagagactttggtggtggtttttgtgg |
49352832 |
T |
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| Q |
200 |
atttaaattgcatgattt |
217 |
Q |
| |
|
||||||||||||||||| |
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| T |
49352833 |
ttttaaattgcatgattt |
49352850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 19030658 - 19030778
Alignment:
| Q |
67 |
tgggaggcgcttggtgttcttctgccaccaaacaggggtaaaaccttggaaggtactagcattcagttactgcaagagctttggtcaagatcatttcttc |
166 |
Q |
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|
|||||||| |||||| |||||| | ||||||||| ||||||||||||| || || |||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
19030658 |
tgggaggcacttggttttcttccacaaccaaacagaggtaaaaccttggtagatattagcattcagtttctgcatgagctttggtcaagatcattccttc |
19030757 |
T |
|
| Q |
167 |
aagattttatagactttggtg |
187 |
Q |
| |
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|||||||| |||| |||||| |
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| T |
19030758 |
aagattttgaagacattggtg |
19030778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29743992 - 29744109
Alignment:
| Q |
1 |
tgttttgcttgcttctctctctttcaaaaggactttatatttactaatatggatgttagcgtgctttgggaggcgcttggtgttcttctgccaccaaaca |
100 |
Q |
| |
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|||||||| |||||||| |||||| ||| |||||| |||||| ||||| |||| | |||||||||||||| |||| | |||| | ||||||||| |
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| T |
29743992 |
tgttttgcctgcttctccctctttgtaaaagactttgtatttagtaataatcatgtcactgtgctttgggaggctcttgatcttctcccatcaccaaaca |
29744091 |
T |
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| Q |
101 |
ggggtaaaaccttggaag |
118 |
Q |
| |
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||||||||||||||||| |
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| T |
29744092 |
agggtaaaaccttggaag |
29744109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 29602209 - 29602152
Alignment:
| Q |
61 |
gtgctttgggaggcgcttggtgttcttctgccaccaaacaggggtaaaaccttggaag |
118 |
Q |
| |
|
|||||||||||||| |||| | |||||| ||||||||| ||||||||||||||||| |
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|
| T |
29602209 |
gtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaag |
29602152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 29751085 - 29751142
Alignment:
| Q |
61 |
gtgctttgggaggcgcttggtgttcttctgccaccaaacaggggtaaaaccttggaag |
118 |
Q |
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|||||||||||||| |||| | |||||| ||||||||| ||||||||||||||||| |
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| T |
29751085 |
gtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaag |
29751142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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