View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16026_low_2 (Length: 513)
Name: NF16026_low_2
Description: NF16026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16026_low_2 |
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| [»] scaffold0831 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 21 - 425
Target Start/End: Complemental strand, 44186564 - 44186158
Alignment:
| Q |
21 |
agagcattgaaataataatggtaaaggaaggttcatatcataaatgtatta--caagaaaacagcaagcccatttctattgaaatggcttcagaacattc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44186564 |
agagcattgaaataataatggtaaaggaaggttcatatcataaatgtattatacaagaaaacagcaagcccatttctattgaaatggcttcagaacattc |
44186465 |
T |
|
| Q |
119 |
aacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaactttggatacagaaacacccaactcctaatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
44186464 |
aacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaagtttggatacagaaacacctaactcctaatt |
44186365 |
T |
|
| Q |
219 |
cggcgaaacgaaagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44186364 |
cggcgaaacgaaagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaa |
44186265 |
T |
|
| Q |
319 |
aacaagctatttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaacatgacactccacgctaggcaagggtccgacaataaagag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44186264 |
aacaagctatttcattgtcattttttataaagaatatatcaactttttttccttctccaacaggacactccacgctaggcaagggtccgacaataaagag |
44186165 |
T |
|
| Q |
419 |
tttagtc |
425 |
Q |
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||||||| |
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| T |
44186164 |
tttagtc |
44186158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 21 - 314
Target Start/End: Complemental strand, 4878448 - 4878151
Alignment:
| Q |
21 |
agagcattgaaataataatggtaaaggaaggttcatatcataaatgtat--tacaagaaaac--agcaagcccatttctattgaaatggcttcagaacat |
116 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||||| |||||| | | | | | || |||| |||||||| |||||||||||||||||||||| |
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| T |
4878448 |
agagcattgaaataaaaatggtaaagaaaggttcatatcacaaatgtgtctttctcgtacactaagcatgcccatttgtattgaaatggcttcagaacat |
4878349 |
T |
|
| Q |
117 |
tcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaactttggatacagaaacacccaactcctaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || |||||| |
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| T |
4878348 |
tcaacttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgggtgaacgctataaacttgggatacagaaacacctaattcctaa |
4878249 |
T |
|
| Q |
217 |
ttcggcgaaacgaaagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaa |
314 |
Q |
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||||||| |||| | ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||||||| |
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| T |
4878248 |
ttcggcgtaacggacgaatgttttgcttataaattgcaaagtgacaacaaaaatactcctctttaacacccaaatcttcaattgtgtgggtatttaaa |
4878151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 121 - 425
Target Start/End: Complemental strand, 1327612 - 1327311
Alignment:
| Q |
121 |
cttggaaataaaatcttaaatcctaacaacaacagtactcataaagctcttgagtgaacgctataaactttggatacagaaacacccaactcctaattcg |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||||||| ||||||| || ||||||||| |
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| T |
1327612 |
cttggtaataaaatcttaaatcctaacaacaagaatactcataaagctcttgggtgaaagctataaacttgggatacaaaaacacctaattcctaattcc |
1327513 |
T |
|
| Q |
221 |
gcgaaacgaaagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaaaa |
320 |
Q |
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| ||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
1327512 |
gataaacgaaag---gtttttcttacaaattgcaaagtgacaaaaaaaaggctcccctttaacacccaaatcttcaattgtttgggtatttaaatcaaaa |
1327416 |
T |
|
| Q |
321 |
caagctatttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaacatgacactccacgctaggcaagggtccgacaataaagagtt |
420 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||| || |||||||||| | ||| |||||||| |||||||||||||||||| ||||||| |
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| T |
1327415 |
caagctacttcattgtcattttttagaaagaatatatcgcctttttttcctgctccaataggacgctccacgccaggcaagggtccgacaatgaagagtt |
1327316 |
T |
|
| Q |
421 |
tagtc |
425 |
Q |
| |
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||||| |
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| T |
1327315 |
tagtc |
1327311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 4877965 - 4877850
Alignment:
| Q |
310 |
ttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcaccnnnnnnncctgctccaacatgacactccacgctaggcaagggtccgac |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||| |
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| T |
4877965 |
ttaaatcaaaacaagctatttcattgtcattttttataaagaatatatcacctttttttcctgctccaacaggacgctccacgctaggcaagggtccgat |
4877866 |
T |
|
| Q |
410 |
aataaagagtttagtc |
425 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
4877865 |
aataaagagtttagtc |
4877850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 44186122 - 44186047
Alignment:
| Q |
429 |
tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtat |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44186122 |
tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaacaagtcaaagtat |
44186047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 429 - 503
Target Start/End: Complemental strand, 1327275 - 1327201
Alignment:
| Q |
429 |
tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagta |
503 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1327275 |
tatgtgaaaagaagatgtctttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagta |
1327201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 4877814 - 4877739
Alignment:
| Q |
429 |
tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtat |
504 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
4877814 |
tatgtgaaaagaagttgtctttacatgctttgagatcaatgcaacaaacccatttaacaccaccaagtcaaagtat |
4877739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 341
Target Start/End: Complemental strand, 1328998 - 1328887
Alignment:
| Q |
230 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaagctatt |
329 |
Q |
| |
|
|||||| ||||||||||||||||| | | |||||| ||| |||| ||||||||||||| | |||||||| |||| ||||||||||||||||| |||| | |
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|
| T |
1328998 |
aagaagatttttcttataaattgcgacctcacaacagaaagactcacctttaacacccataccttcaattatttgggtatttaaatcaaaacaggctaat |
1328899 |
T |
|
| Q |
330 |
tcattgtcattt |
341 |
Q |
| |
|
||||||||||| |
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|
| T |
1328898 |
ccattgtcattt |
1328887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1327758 - 1327716
Alignment:
| Q |
18 |
agtagagcattgaaataataatggtaaaggaaggttcatatca |
60 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1327758 |
agtagagcattgaaataataatggtaaagaaaggttcatatca |
1327716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 44187616 - 44187570
Alignment:
| Q |
276 |
cctttaacacccagatcttcaattgtttgagtatttaaatcaaaaca |
322 |
Q |
| |
|
||||||||||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
44187616 |
cctttaacacccatatcttcaattgtttgggcatttaaatcaaaaca |
44187570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 1327672 - 1327623
Alignment:
| Q |
75 |
gaaaacagcaagcccatttctattgaaatggcttcagaacattcaacttg |
124 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||||| |||||||||| |
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|
| T |
1327672 |
gaaaacagaaagccaatttgtattgaaatggcttcagaatattcaacttg |
1327623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 504
Target Start/End: Complemental strand, 26532359 - 26532284
Alignment:
| Q |
429 |
tatgtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtat |
504 |
Q |
| |
|
||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
26532359 |
tatgtgaaaagctgctgtctttacatgctttaagatcatagcaacaaacccatttaacaccaccaagtctaagtat |
26532284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 26532590 - 26532496
Alignment:
| Q |
230 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaag |
324 |
Q |
| |
|
||||| |||||||| ||||||| |||||| |||| | ||| |||||||||||||||| | ||| |||||| |||| ||||||||||||||||||| |
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|
| T |
26532590 |
aagaaagtttttctgataaatttcaaagtcacaatataaagactcccctttaacaccaaaatcatcaattctttgggtatttaaatcaaaacaag |
26532496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 361
Target Start/End: Original strand, 1144 - 1275
Alignment:
| Q |
230 |
aagaaggtttttcttataaattgcaaagtgacaacaaaaatactcccctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaagctatt |
329 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| | || | | | |||||||||||| ||||||||||||||| ||| |||| ||||||||||| | | |
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|
| T |
1144 |
aagaaggtttttcttataaattgccaagtcacaatataagtgattcactttaacacccaaatcttcaattgtttgggtaattaagtcaaaacaagccaat |
1243 |
T |
|
| Q |
330 |
tcattgtcattttttataaagaatatatcacc |
361 |
Q |
| |
|
||||| || ||| | || || ||||||||||| |
|
|
| T |
1244 |
tcattctcgtttctaatcaacaatatatcacc |
1275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 16921183 - 16921102
Alignment:
| Q |
276 |
cctttaacacccagatcttcaattgtttgagtatttaaatcaaaacaagctatttcattgtcattttttataaagaatatat |
357 |
Q |
| |
|
||||||||||| || |||||||| |||| ||||| |||||||| || |||||||||| |||| |||| | |||||||||| |
|
|
| T |
16921183 |
cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatat |
16921102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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