View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16026_low_3 (Length: 453)

Name: NF16026_low_3
Description: NF16026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16026_low_3
NF16026_low_3
[»] chr2 (3 HSPs)
chr2 (19-453)||(41358081-41358515)
chr2 (52-209)||(34233445-34233596)
chr2 (75-203)||(4765737-4765862)
[»] chr6 (4 HSPs)
chr6 (119-188)||(5076488-5076558)
chr6 (162-209)||(14710079-14710126)
chr6 (133-198)||(17247905-17247971)
chr6 (155-203)||(7723857-7723905)
[»] chr7 (5 HSPs)
chr7 (161-209)||(2377438-2377485)
chr7 (119-209)||(35720282-35720373)
chr7 (174-215)||(23475753-23475794)
chr7 (174-215)||(23534166-23534207)
chr7 (17-49)||(36653696-36653728)
[»] chr8 (8 HSPs)
chr8 (162-210)||(19923482-19923530)
chr8 (134-209)||(34743184-34743260)
chr8 (133-206)||(28009208-28009282)
chr8 (133-206)||(28066511-28066585)
chr8 (26-65)||(33228252-33228291)
chr8 (165-210)||(24628218-24628263)
chr8 (162-210)||(13987325-13987373)
chr8 (29-61)||(34743275-34743307)
[»] chr3 (4 HSPs)
chr3 (130-203)||(16252339-16252413)
chr3 (156-209)||(11265014-11265067)
chr3 (133-202)||(34366789-34366859)
chr3 (157-214)||(25856684-25856741)
[»] chr5 (4 HSPs)
chr5 (161-209)||(36193614-36193662)
chr5 (169-210)||(15238979-15239020)
chr5 (162-210)||(35110567-35110615)
chr5 (33-65)||(40266434-40266466)
[»] chr4 (3 HSPs)
chr4 (33-65)||(35313983-35314015)
chr4 (52-107)||(18940332-18940387)
chr4 (156-209)||(28999531-28999584)
[»] scaffold0003 (2 HSPs)
scaffold0003 (133-206)||(420235-420309)
scaffold0003 (161-209)||(420789-420837)
[»] scaffold0260 (1 HSPs)
scaffold0260 (133-209)||(20516-20593)


Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 41358081 - 41358515
Alignment:
Q  19 ggtgttatatccaacgtgagttaactcacgcagcatgagttaactcaagcgggttatatttttatgtttaccacttgcgtgacttaactcaagcgggtgt 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41358081 ggtgttatatccaacgtgagttaactcacgcaacatgagttaactcaagcgggttatatttttatgtttaacacttgcgtgacttaactcaagcgggtgt 41358180  T
Q  119 gtgttatacccagtgtgagttaattcacgcaggagtatttgagaagtttggttgggagtgagcattttttgttaggagaagagcatttttcaaactaaat 218  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358181 gtgttatacccagtgtgagttaattcacgcaagagtatttgggaagtttggttgggagtgagcattttttgttaggagaagagcatttttcaaactaaat 41358280  T
Q  219 gattagtaccaccataagacattgcacatctccacccaaaatttaaggtattaggaatacaaatcatctttcttacatatctaacatataatctattcaa 318  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41358281 gattagtaccaccagaagacattgcacatctccatccaaaatttaaggtattaggaatacaaatcatctttcttacatatctaacatataatctattcaa 41358380  T
Q  319 agtcgacgtgggactaaccacttacgcttgatttcaagaatctttccctcaagtgttagtctacatcacttcacttgcatcttcattaacaaccaattaa 418  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  41358381 agtcgacgtgggactaaccacttacgcttgaatgcaagaatctttccctcaagtgttagtctacatcacctcacttgcatcttcattaccaaccaattaa 41358480  T
Q  419 acacaccttctgactatactctcaagaagactttc 453  Q
    |||||||||||||||||||||||||||||||||||    
T  41358481 acacaccttctgactatactctcaagaagactttc 41358515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 34233596 - 34233445
Alignment:
Q  52 catgagttaactcaagcgggttatatttttatgtttaccacttgcgtgacttaactcaagcgggtgtgtgttatacccagtgtgagttaattcacgcagg 151  Q
    |||||||||| ||||||||||  |  ||| ||||||| ||| ||||||| |||||||||| ||||||    ||||  ||| ||||||||| |||||||||    
T  34233596 catgagttaattcaagcgggtgtt--tttcatgtttaacacatgcgtgagttaactcaagtgggtgt----tatattcagcgtgagttaactcacgcagg 34233503  T
Q  152 agtattt-gagaagtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
     |||||| || ||||||| ||| ||||||| ||||||| || |||||||||||||||||    
T  34233502 ggtattttgaaaagtttgattgtgagtgagaattttttttt-ggagaagagcatttttc 34233445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 4765862 - 4765737
Alignment:
Q  75 tatttttatgtttaccacttgcgtgacttaactcaagcgggtgtgtgttatacccagtgtgagttaattcacgcaggagta-tttgagaagtttggttgg 173  Q
    |||||| ||||||| | | ||||||| |||||||||||||     |||||||||||| ||||||||||||||||||  ||| |||  |||||||| |||     
T  4765862 tattttcatgtttaactcctgcgtgagttaactcaagcgg----atgttatacccagcgtgagttaattcacgcagaggtattttcggaagtttgattga 4765767  T
Q  174 gagtgagcattttttgttaggagaagagca 203  Q
    ||| ||  ||||||| || |||||||||||    
T  4765766 gagcgaatattttttattgggagaagagca 4765737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 5076558 - 5076488
Alignment:
Q  119 gtgttatacccagtgtgagttaattcacgcaggagta-tttgagaagtttggttgggagtgagcatttttt 188  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||  ||||||||||||||||| |||||||||    
T  5076558 gtgttatacccagcgtgagttaactcacgcaggagtattttggaaagtttggttgggagtgggcatttttt 5076488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 14710126 - 14710079
Alignment:
Q  162 aagtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||||||    
T  14710126 aagttgggttggaagtgagcattttttgttgggagaagagcatttttc 14710079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 17247971 - 17247905
Alignment:
Q  133 gtgagttaattcacgcaggagtatttgag-aagtttggttgggagtgagcattttttgttaggagaa 198  Q
    ||||||||| |||||||| |||||||  | ||||||||||||||| ||||| |||||||| ||||||    
T  17247971 gtgagttaactcacgcagaagtattttcggaagtttggttgggagcgagcaatttttgttgggagaa 17247905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 203
Target Start/End: Original strand, 7723857 - 7723905
Alignment:
Q  155 atttgagaagtttggttgggagtgagcattttttgttaggagaagagca 203  Q
    |||| ||||||||| |||||||||||||  | |||||||||||||||||    
T  7723857 attttagaagtttgattgggagtgagcaaatcttgttaggagaagagca 7723905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 2377438 - 2377485
Alignment:
Q  161 gaagtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2377438 gaagtttggttgggagtgag-attttttgttaggagaagagcatttttc 2377485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 35720282 - 35720373
Alignment:
Q  119 gtgttatacccagtgtgagttaattcacgcaggagtattt-gagaagtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
    |||| ||| |||| ||||||||| ||||||| |||||||| || ||||| |||||||||||| |||||||| || |||||||||| ||||||    
T  35720282 gtgtcatatccagcgtgagttaactcacgcatgagtattttgaaaagttaggttgggagtgaacatttttttttgggagaagagcttttttc 35720373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 23475753 - 23475794
Alignment:
Q  174 gagtgagcattttttgttaggagaagagcatttttcaaacta 215  Q
    |||||||||||||||||| ||||||||||| ||||| |||||    
T  23475753 gagtgagcattttttgttgggagaagagcaattttccaacta 23475794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 23534166 - 23534207
Alignment:
Q  174 gagtgagcattttttgttaggagaagagcatttttcaaacta 215  Q
    |||||||||||||||||| ||||||||||| ||||| |||||    
T  23534166 gagtgagcattttttgttgggagaagagcaattttccaacta 23534207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 36653728 - 36653696
Alignment:
Q  17 caggtgttatatccaacgtgagttaactcacgc 49  Q
    ||||||||||||||| |||||||||||||||||    
T  36653728 caggtgttatatccagcgtgagttaactcacgc 36653696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 19923482 - 19923530
Alignment:
Q  162 aagtttggttgggagtgagcattttttgttaggagaagagcatttttca 210  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  19923482 aagtttggttgggagtgagctttttttgttgggagaagagcaattttca 19923530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 34743260 - 34743184
Alignment:
Q  134 tgagttaattcacgcaggagtatttgaga-agtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
    |||||||| |||||| |||||||||  || ||||  |||||||| |||||||||||||| |||||||||||||||||    
T  34743260 tgagttaactcacgcgggagtattttggacagttcagttgggagggagcattttttgttgggagaagagcatttttc 34743184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 28009208 - 28009282
Alignment:
Q  133 gtgagttaattcacgcaggagtatttgagaa-gtttggttgggagtgagcattttttgttaggagaagagcattt 206  Q
    ||||||||| ||||||||| ||||||  ||| ||||||||||||| ||||| |||||| | ||||||||||||||    
T  28009208 gtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagcattt 28009282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 28066511 - 28066585
Alignment:
Q  133 gtgagttaattcacgcaggagtatttgagaa-gtttggttgggagtgagcattttttgttaggagaagagcattt 206  Q
    ||||||||| ||||||||| ||||||  ||| ||||||||||||| ||||| |||||| | ||||||||||||||    
T  28066511 gtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaagagcattt 28066585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 33228291 - 33228252
Alignment:
Q  26 tatccaacgtgagttaactcacgcagcatgagttaactca 65  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  33228291 tatccaacgtgagttaactcacgcagcgtgacttaactca 33228252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 24628263 - 24628218
Alignment:
Q  165 tttggttgggagtgagcattttttgttaggagaagagcatttttca 210  Q
    ||||||| ||||||||| ||||||||| |||||| |||||||||||    
T  24628263 tttggttaggagtgagcgttttttgttgggagaaaagcatttttca 24628218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 13987373 - 13987325
Alignment:
Q  162 aagtttggttgggagtgagcattttttgttaggagaagagcatttttca 210  Q
    |||||||||||| |||||||| |||||| | ||||||||||| ||||||    
T  13987373 aagtttggttggaagtgagcaatttttgatgggagaagagcaattttca 13987325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 34743275 - 34743307
Alignment:
Q  29 ccaacgtgagttaactcacgcagcatgagttaa 61  Q
    |||||||||||||||||||||||||||| ||||    
T  34743275 ccaacgtgagttaactcacgcagcatgacttaa 34743307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 16252413 - 16252339
Alignment:
Q  130 agtgtgagttaattcacgcaggagtattt-gagaagtttggttgggagtgagcattttttgttaggagaagagca 203  Q
    |||||||||||| ||||||| | |||||| ||||| |||||||||  ||||||| |||||||| |||||||||||    
T  16252413 agtgtgagttaactcacgcaagggtattttgagaaatttggttggatgtgagcaatttttgtttggagaagagca 16252339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 11265067 - 11265014
Alignment:
Q  156 tttgagaagtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
    |||||||||||| ||||||||||||||  || |||||||||||||||| |||||    
T  11265067 tttgagaagtttagttgggagtgagcaaattatgttaggagaagagcaattttc 11265014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 34366789 - 34366859
Alignment:
Q  133 gtgagttaattcacgcaggagtatttg-agaagtttggttgggagtgagcattttttgttaggagaagagc 202  Q
    ||||||||||||||||| || |||||  ||||||||||||||||| || || |||||||| | ||||||||    
T  34366789 gtgagttaattcacgcatgaatattttcagaagtttggttgggagcgaacaatttttgttggaagaagagc 34366859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 25856741 - 25856684
Alignment:
Q  157 ttgagaagtttggttgggagtgagcattttttgttaggagaagagcatttttcaaact 214  Q
    ||||||||||||||||  ||||| | || |||||||||||||||||| ||||| ||||    
T  25856741 ttgagaagtttggttgaaagtgaacgttatttgttaggagaagagcaattttccaact 25856684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 36193614 - 36193662
Alignment:
Q  161 gaagtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
    |||||||||||||||| ||||| || ||||| |||||||||||||||||    
T  36193614 gaagtttggttgggagagagcaattgttgttgggagaagagcatttttc 36193662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 15238979 - 15239020
Alignment:
Q  169 gttgggagtgagcattttttgttaggagaagagcatttttca 210  Q
    ||||||||||||| ||||||||| ||||||||||| ||||||    
T  15238979 gttgggagtgagcgttttttgttgggagaagagcaattttca 15239020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 35110567 - 35110615
Alignment:
Q  162 aagtttggttgggagtgagcattttttgttaggagaagagcatttttca 210  Q
    ||||||||||||||||||||| || ||||| |||||||| || ||||||    
T  35110567 aagtttggttgggagtgagcaattcttgttgggagaagaacaattttca 35110615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 40266434 - 40266466
Alignment:
Q  33 cgtgagttaactcacgcagcatgagttaactca 65  Q
    ||||||||||||| |||||||||||||||||||    
T  40266434 cgtgagttaactcccgcagcatgagttaactca 40266466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 35313983 - 35314015
Alignment:
Q  33 cgtgagttaactcacgcagcatgagttaactca 65  Q
    |||||||||||||||||||||||||||||||||    
T  35313983 cgtgagttaactcacgcagcatgagttaactca 35314015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 18940387 - 18940332
Alignment:
Q  52 catgagttaactcaagcgggttatatttttatgtttaccacttgcgtgacttaact 107  Q
    ||||||||||||||||| ||||||||||| |||| || ||||||| ||| ||||||    
T  18940387 catgagttaactcaagcaggttatattttcatgtataacacttgcatgagttaact 18940332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 28999531 - 28999584
Alignment:
Q  156 tttgagaagtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
    |||||||||||  |||||||| |||||||||| ||| ||||||||||| |||||    
T  28999531 tttgagaagttcagttgggagggagcatttttagttgggagaagagcaattttc 28999584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 420309 - 420235
Alignment:
Q  133 gtgagttaattcacgcaggagtatttg-agaagtttggttgggagtgagcattttttgttaggagaagagcattt 206  Q
    ||||||| |||||||| |||||||||  | |||||||||||||||  || | |||||||| ||||||||||||||    
T  420309 gtgagttgattcacgcgggagtattttcaaaagtttggttgggagctagtaatttttgttgggagaagagcattt 420235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 420789 - 420837
Alignment:
Q  161 gaagtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
    ||||||||||||||||  || | |||||||| |||||||||||||||||    
T  420789 gaagtttggttgggagctagtaatttttgttgggagaagagcatttttc 420837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 20516 - 20593
Alignment:
Q  133 gtgagttaattcacgcaggagta-tttgagaagtttggttgggagtgagcattttttgttaggagaagagcatttttc 209  Q
    ||||||||| |||| |||||||| |||| ||||||  ||||| ||||||| ||||||||| ||| ||||||| |||||    
T  20516 gtgagttaactcacacaggagtattttgggaagttcagttggtagtgagcgttttttgttgggaaaagagcaattttc 20593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University