View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16026_low_5 (Length: 413)
Name: NF16026_low_5
Description: NF16026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16026_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 36327605 - 36328003
Alignment:
| Q |
1 |
gaccaggcatcgtttcagcaataacaaacgccattttatcagagtcacaagattcatgcgaccatgaacaatatttaagggatttcaaaagagggcaata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327605 |
gaccaggcatcgtttcagcaataacaaacgccattttatcagagtcacaagattcatgcgaccatgaacaatatttaagggatttcaaaagagggcaata |
36327704 |
T |
|
| Q |
101 |
acgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327705 |
acgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttca |
36327804 |
T |
|
| Q |
201 |
tctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcatcaaaaa |
300 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327805 |
tctgtaatcttcgagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcatcaaaaa |
36327904 |
T |
|
| Q |
301 |
atacaattgaatgcaagaataaaataagatattggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatg |
399 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36327905 |
atacaattgaatgcaagaataaaataagattttggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatg |
36328003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 36325741 - 36326023
Alignment:
| Q |
1 |
gaccaggcatcgtttcagcaataacaaacgccattttatcagagtcacaagattcatgcgaccatgaacaatatttaagggatttcaaaagagggcaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| ||| || | | | | || ||||||| |||||||||||||||||| | |
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| T |
36325741 |
gaccaggcatcgtttcagcaataacaaaagccattttatcagattcacgagaagcaaaccatcctactgaaaatttaagcgatttcaaaagagggcaaga |
36325840 |
T |
|
| Q |
101 |
acgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttca |
200 |
Q |
| |
|
||||| ||||||| |||||| || || ||||| | ||||||||||||||| |||||| || | ||||||||||||| ||||||| ||||||||| | |
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| T |
36325841 |
tcgaccaagggcttcaagagagacctcagttagataagaatgtgaaatgtcaaccttctctaacagcggaagctttctcaaggcttcactaaatccttta |
36325940 |
T |
|
| Q |
201 |
tctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaa |
284 |
Q |
| |
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| ||| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
36325941 |
tttgtcatcccccaacaatttacaagccgcatgcaaagtaggtgactgccactgtaaaatttat-ttaaaaagaactattaaaa |
36326023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 36313363 - 36313646
Alignment:
| Q |
1 |
gaccaggcatcgtttcagcaataacaaacgccattttatcagagtcacaagattcatgcgaccatgaa----caatatttaagggatttcaaaagagggc |
96 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||||||||||||| | ||| |||| ||| ||||||| |||||||||||||||| |
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|
| T |
36313363 |
gaccaggcattgtttcagcaataacaagtgccgttttatcagagtcacaagatgtaa---accttgaatttacaa-atttaagcgatttcaaaagagggc |
36313458 |
T |
|
| Q |
97 |
aataacgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatcc |
196 |
Q |
| |
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| | ||||| ||||||| |||||| ||||| ||||||| | ||||||||| ||| ||||||||| | ||||||||||||| |||||| ||||||| |
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| T |
36313459 |
atgatcgaccaagggcttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaagctttctcacagcttcactaaatcc |
36313558 |
T |
|
| Q |
197 |
ttcatctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaa |
284 |
Q |
| |
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||||||||||||| | ||||||| |||||||||||||| | |||||| ||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
36313559 |
ttcatctgtaatcctcgagcaatctacaagccccatgcgacataggtgtctgccactgtaaaatttgaattaaaaagaactattaaaa |
36313646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 36333430 - 36333837
Alignment:
| Q |
1 |
gaccaggcatcgtttcagcaataacaaacgccattttatcagagtcacaagattca------tgcgaccatgaacaatatttaagggatttcaaaagagg |
94 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| | | |||| | ||||||||| ||||||||||| | |
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| T |
36333430 |
gaccaggcatcgtttcagcaatagcaagcgccattttatcagagtcgcaagattgcgtagagtaccaccacacatgatatttaagcaatttcaaaagatg |
36333529 |
T |
|
| Q |
95 |
gcaataacgacctagggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaat |
194 |
Q |
| |
|
|||| | ||||| || ||| |||||| |||||||||| ||||| ||||||||| | |||||||| |||||||||||||||||||||| | |||| |
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| T |
36333530 |
gcaagatcgaccaagaacttcaagaga--catcggttagacagcaatatgaaatgtccactttctccaactgtggaagctttctcatggctttaccaaat |
36333627 |
T |
|
| Q |
195 |
ccttcatctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcat |
294 |
Q |
| |
|
|||| |||||||||| | ||||||||||||| ||||||| |||| |||||||||||| ||||||| ||||||||||| |||||| | ||||||| |
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|
| T |
36333628 |
cctttatctgtaatcaaacaacaatttacaagccgcatgcaacgtagctgactgccactgcaaaatttgaattaaaaagaactattaacaaatgcttcaa |
36333727 |
T |
|
| Q |
295 |
caaa----------aaatacaattgaatgcaagaataaaataagatattggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaa |
384 |
Q |
| |
|
||| | ||||| ||||||||| ||||||| |||||| ||||||||||||||| ||||||||| | || ||||||||| | |||||||| |
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|
| T |
36333728 |
aaaaacagtaatatatatacagttgaatgcaggaataaattaagattttggtattaattactgatcagctatgcatttaaggagatcatcgatgcaaaaa |
36333827 |
T |
|
| Q |
385 |
cgctcaatat |
394 |
Q |
| |
|
|||| ||||| |
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|
| T |
36333828 |
cgcttaatat |
36333837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36336134 - 36336253
Alignment:
| Q |
1 |
gaccaggcatcgtttcagcaataacaaacgccattttatcagagtcacaagattcatgcgaccatgaacaatatttaagggatttcaaaagagggcaata |
100 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||| ||| | ||| ||||||||||||||||| | |
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|
| T |
36336134 |
gaccaggcattgtttcagcaataagaaacgccattttatcagagtcacaagagtcaagcgagcatgaattatactgaagccatttcaaaagagggcaaga |
36336233 |
T |
|
| Q |
101 |
acgacctagggctttaagag |
120 |
Q |
| |
|
||||| ||||||| ||||| |
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|
| T |
36336234 |
tcgaccaagggcttcaagag |
36336253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 36320931 - 36321046
Alignment:
| Q |
168 |
ggaagctttctcatggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatatt |
267 |
Q |
| |
|
||||||||||| | |||||| ||||||||| || ||||||| | ||| ||||||||| ||||||| ||||||||||||||||||||||||||| || |
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|
| T |
36320931 |
ggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacttacaagccacatgcaacgtaggtgactgccactgtaaaatttat-tt |
36321029 |
T |
|
| Q |
268 |
aaaaagaagtattaaaa |
284 |
Q |
| |
|
| |||||| |||||||| |
|
|
| T |
36321030 |
agaaagaactattaaaa |
36321046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 394
Target Start/End: Original strand, 36326051 - 36326102
Alignment:
| Q |
343 |
tacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatat |
394 |
Q |
| |
|
||||| || |||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
36326051 |
tacttgtcggctatgcatttgaggagatcattggtgcaaaaacgctcaatat |
36326102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36320761 - 36320797
Alignment:
| Q |
1 |
gaccaggcatcgtttcagcaataacaaacgccatttt |
37 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
36320761 |
gaccaggcatcgtttcagcaatagcaagcgccatttt |
36320797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 268
Target Start/End: Original strand, 16053213 - 16053338
Alignment:
| Q |
143 |
tgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtagg |
242 |
Q |
| |
|
||||||| ||| |||||| || | |||||||| |||| |||||| |||||||||| |||| ||| | |||||| ||||| || |||| || ||||| |
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|
| T |
16053213 |
tgaaatgacaagcttctctaacagcggaagcttcctcacagcttcactaaatccttcttctgaaatttcatagcaatctacaaaccgcatggaacgtagg |
16053312 |
T |
|
| Q |
243 |
tgactgccactgtaaaatttatatta |
268 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
16053313 |
tgactgccactgtaaaatttaaatta |
16053338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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