View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16026_low_8 (Length: 316)

Name: NF16026_low_8
Description: NF16026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16026_low_8
NF16026_low_8
[»] chr3 (4 HSPs)
chr3 (98-301)||(40660109-40660312)
chr3 (1-65)||(40660332-40660397)
chr3 (1-65)||(54261263-54261328)
chr3 (1-65)||(3136699-3136764)
[»] chr7 (3 HSPs)
chr7 (1-65)||(43861976-43862041)
chr7 (1-65)||(27875092-27875157)
chr7 (1-65)||(18785709-18785774)
[»] chr4 (4 HSPs)
chr4 (1-65)||(42722581-42722646)
chr4 (1-65)||(53599102-53599167)
chr4 (1-65)||(8064802-8064867)
chr4 (1-65)||(14597904-14597969)
[»] chr6 (1 HSPs)
chr6 (1-65)||(21898689-21898754)
[»] chr5 (3 HSPs)
chr5 (1-65)||(40117453-40117518)
chr5 (1-65)||(3653918-3653983)
chr5 (1-65)||(5731924-5731989)
[»] chr2 (2 HSPs)
chr2 (1-65)||(41220672-41220737)
chr2 (1-65)||(7747311-7747376)
[»] chr1 (3 HSPs)
chr1 (3-48)||(2270278-2270323)
chr1 (1-61)||(5855560-5855621)
chr1 (1-65)||(49078152-49078217)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-65)||(219409-219474)
[»] chr8 (3 HSPs)
chr8 (1-61)||(6100513-6100574)
chr8 (1-61)||(10927647-10927708)
chr8 (4-63)||(24938568-24938628)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 98 - 301
Target Start/End: Complemental strand, 40660312 - 40660109
Alignment:
Q  98 cggattgtagcctatagaggaggttatcacccgggttttgatagtaaatttaaaatgttggtataatgaaaaaatatacttaattaacagatagatattt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40660312 cggattgtagcctatagaggaggttatcacccgggttttgatagtaaatttaaaatgttggtataatgaaaaaatatacttaattaacagataaatattt 40660213  T
Q  198 tgagtgcatgcacctgatcatgatggtcatcgtggatgacatgctgcaaatccaactgtgcctgggcttttgtggattcataacgcgatgatgatgcaac 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40660212 tgagtgcatgcacctgatcatgatggtcatcgtggatgacatgctgcaaatccaactgtgcctgggcttttgtggattcataacgcgatgatgatgcaac 40660113  T
Q  298 aaat 301  Q
    ||||    
T  40660112 aaat 40660109  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40660397 - 40660332
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||| || | ||||||||||||||    
T  40660397 cagtgcgcatgcctctacgcatgaaccggattaatcattcacctttggtgggtcgaaaaccggtgc 40660332  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 54261263 - 54261328
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||  | |||||||| |||||||||||| | ||| ||||||||||    
T  54261263 cagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccggtgc 54261328  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3136764 - 3136699
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    |||||||||||||||||||||||| || |||||||| | ||||||| || | ||| ||||||||||    
T  3136764 cagtgcgcatgcctctacgcatgagtcggattagtcgtccacctttggttggtcggaaaccggtgc 3136699  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43862041 - 43861976
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatcg-attagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||  || ||||||||||||||||| || ||||||||||||||||    
T  43862041 cagtgcgcatgcctctacgcatgagccggattagtcattcacctttggtggatcgaaaaccggtgc 43861976  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27875157 - 27875092
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatcg-attagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    |||||| ||||||||||||||||| ||| ||||||| | |||||||||| | ||||||||||||||    
T  27875157 cagtgcacatgcctctacgcatgagtcgcattagtcgtccacctttagtgggtcgaaaaccggtgc 27875092  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18785709 - 18785774
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaa-tcgattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||| | |||||||| ||||||| | || | ||| ||||||||||    
T  18785709 cagtgcgcatgcctctacgcatgaactggattagtcgttcacctctggtgggtcggaaaccggtgc 18785774  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42722646 - 42722581
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatcg-attagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||  || ||||||| |||||||||||| | ||||||||||||||    
T  42722646 cagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcgaaaaccggtgc 42722581  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53599102 - 53599167
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||  | ||||| || |||||||||||| ||||| ||||||||||    
T  53599102 cagtgcgcatgcctctacgcatgagccggattaatcgttcacctttagtggatcggaaaccggtgc 53599167  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8064867 - 8064802
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||  | |||||||| | |||| ||| ||| ||||||||||||||    
T  8064867 cagtgcgcatgcctctacgcatgagccggattagtcgtccaccattaataggtcgaaaaccggtgc 8064802  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14597969 - 14597904
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaa-tcgattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||| ||| | |||||||| | |||||||  | ||||||||||||||||    
T  14597969 cagtgcgcatgcctctacgcacgaactggattagtcgtccacctttgatggatcgaaaaccggtgc 14597904  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21898689 - 21898754
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||  | |||||||| |||||||||||| | ||| ||||||||||    
T  21898689 cagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccggtgc 21898754  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40117453 - 40117518
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||  | ||||| || ||||||||| || ||||||||||||||||    
T  40117453 cagtgcgcatgcctctacgcatgagccggattaatcgttcacctttggtggatcgaaaaccggtgc 40117518  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3653983 - 3653918
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatcg-attagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||| ||  || ||||||| | ||||||| || ||||||||||||||||    
T  3653983 cagtgcgcatgcctctacgcacgaggcggattagtcgtccacctttggtggatcgaaaaccggtgc 3653918  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5731989 - 5731924
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||| ||||  | |||||||| |||||||||||| | ||| ||||||||||    
T  5731989 cagtgcgcatgcctctacgtatgagccagattagtcgttcacctttagtgggtcggaaaccggtgc 5731924  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41220672 - 41220737
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatcg-attagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||  || ||||||| |||||||||||| | ||| ||||||||||    
T  41220672 cagtgcgcatgcctctacgcatgagccgaattagtcgttcacctttagtgggtcggaaaccggtgc 41220737  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 7747311 - 7747376
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatcg-attagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||| ||||||||||||||||||  || ||||||| |||||||||||| | ||| ||||||||||    
T  7747311 cagtgtgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccggtgc 7747376  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 2270323 - 2270278
Alignment:
Q  3 gtgcgcatgcctctacgcatgaatcgattagtcattcacctttagt 48  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||||    
T  2270323 gtgcgcatacctctacgcatgagtcgattaatcattcacctttagt 2270278  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5855560 - 5855621
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccg 61  Q
    ||||||||||||||||||||||||  | |||||||| |||||||||||| | ||| ||||||    
T  5855560 cagtgcgcatgcctctacgcatgaggcggattagtcgttcacctttagtgggtcggaaaccg 5855621  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 49078152 - 49078217
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||||||  | |||||||| |||||| || |||| ||| ||||||||||    
T  49078152 cagtgcgcatgcctctacgcatgagccggattagtcgttcaccattggtaggtcggaaaccggtgc 49078217  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 219409 - 219474
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaa-tcgattagtcattcacctttagtagatcgaaaaccggtgc 65  Q
    ||||||||||||||||||||| ||| | |||||||| | |||||||  | ||||||||||||||||    
T  219409 cagtgcgcatgcctctacgcacgaactggattagtcgtccacctttgatggatcgaaaaccggtgc 219474  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6100513 - 6100574
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatcg-attagtcattcacctttagtagatcgaaaaccg 61  Q
    ||||||||||||| ||||||||||  || ||||||| |||||||||||| | ||||||||||    
T  6100513 cagtgcgcatgccactacgcatgagccggattagtcgttcacctttagtgggtcgaaaaccg 6100574  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10927647 - 10927708
Alignment:
Q  1 cagtgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccg 61  Q
    ||||||||||||||||||||||||  | |||||||| |||||||||||| | ||| ||||||    
T  10927647 cagtgcgcatgcctctacgcatgagccggattagtcgttcacctttagtgggtcggaaaccg 10927708  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 24938628 - 24938568
Alignment:
Q  4 tgcgcatgcctctacgcatgaatc-gattagtcattcacctttagtagatcgaaaaccggt 63  Q
    |||||||||||||||||||||| | |||||||||| |||||||  | ||||| ||||||||    
T  24938628 tgcgcatgcctctacgcatgaaccggattagtcatccacctttgatggatcggaaaccggt 24938568  T

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