View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16027_high_10 (Length: 265)
Name: NF16027_high_10
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16027_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 8408684 - 8408451
Alignment:
| Q |
11 |
attttagaaaatggaatgcgatgttttaagagaaatatatcagcaaacctttaaataaacggctaaagcttaaacatatcaaaacatacccacttgctag |
110 |
Q |
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| T |
8408684 |
attttagaaaacggaatacgatgttttaagagaaatatatcagcaaaccgttaaataaacagctaaagcttaaacatatcaaaacatacacacttgctag |
8408585 |
T |
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| Q |
111 |
tcaacaagcttgcagataagtaaaagaaggttgcttttgcctccccagctatggcttttccgatcattgttttaccagttccctacattcaagcataacc |
210 |
Q |
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| T |
8408584 |
tcaacgagcttgcagatatgtaaaagaaggttgcttttgcctccccagctatggcttttccgatcattgttttaccagttccctacattcaagcataaca |
8408485 |
T |
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| Q |
211 |
gagtaaagagcaggtctttgaaatttataacatc |
244 |
Q |
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| T |
8408484 |
gatgaaagagcaggtctttgaaatttataacatc |
8408451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 8398440 - 8398612
Alignment:
| Q |
23 |
ggaatgcgatgttttaagagaaatatatcagcaaacctttaaataaacggctaaagcttaaacatatcaaaacatacccacttgctagtcaacaagcttg |
122 |
Q |
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||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||||| || |||||||||||||||||| ||||||| | | |||||| |
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| T |
8398440 |
ggaatacgatgttttaagagaaatatatcaacaaaccattaaataaacggttaaagctaaagcatatcaaaacatacccatttgctagatagcgagcttg |
8398539 |
T |
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| Q |
123 |
cagataagtaaaagaaggttgcttttgcctccccagctatggcttttccgatcattgttttaccagttcccta |
195 |
Q |
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| T |
8398540 |
cagatatgtaaaagaaggctgcctttgcctccccagctatggcttttccaatcattgttttaccagttcccta |
8398612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 8423904 - 8423739
Alignment:
| Q |
30 |
gatgttttaagagaaatatatcagcaaacctttaaa-taaacggctaaagcttaaacatatcaaaacatacccacttgctagtcaacaagcttgcagata |
128 |
Q |
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|||||| || ||||| ||||||||||||| | ||| ||||| ||||||||| || ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
8423904 |
gatgttataggagaagtatatcagcaaacatccaaaataaacagctaaagctgaagcatatcaaa-catacccacttgctagtcaatgagcttgcagata |
8423806 |
T |
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| Q |
129 |
agtaaaagaaggttgcttttgcctccccagctatggcttttccgatcattgttttaccagttcccta |
195 |
Q |
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||||||||||||||| || || |||||||| ||||| || || ||||||||||| ||||||||||| |
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| T |
8423805 |
tgtaaaagaaggttgccttcgcttccccagcaatggccttcccaatcattgttttgccagttcccta |
8423739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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