View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16027_high_13 (Length: 238)
Name: NF16027_high_13
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16027_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 27094348 - 27094564
Alignment:
| Q |
10 |
gtagataatactaacaataacactaagtttcatcattgtcatttcaacaactccatgtgaaaatttgtaaacgtggttagaaactattggttcaacagtg |
109 |
Q |
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| T |
27094348 |
gtagacaacactaacaataacactaagtttcatcattgtcatttcaacaactccatgtgaaaatttgtaaacgtggttagaaactattggttcaacagtg |
27094447 |
T |
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| Q |
110 |
ttgagaggaagaaaatacaagaaaagagagacagagaaagataacacactaagttttgtataaatcag-catgtgagtaattaaagtataaaacaataat |
208 |
Q |
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| T |
27094448 |
ttgagaggaagaaaatacaagaaaagagagacagagagagataacacactaagttttgtataaatcagacatgtgagtaattaaagtataaaacaataat |
27094547 |
T |
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| Q |
209 |
gttttgtgagtcattat |
225 |
Q |
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||||||||||||||||| |
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| T |
27094548 |
gttttgtgagtcattat |
27094564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 27183955 - 27183739
Alignment:
| Q |
10 |
gtagataatactaacaataacactaagtttcatcattgtcatttcaacaactccatgtgaaaatttgtaaacgtggttagaaactattggttcaacagtg |
109 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27183955 |
gtagacaacactaacaataacactaagtttcatcattgtcatttcaacaactccatgtgaaaatttgtaaacgtggttagaaactattggttcaacagtg |
27183856 |
T |
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| Q |
110 |
ttgagaggaagaaaatacaagaaaagagagacagagaaagataacacactaagttttgtataaatcag-catgtgagtaattaaagtataaaacaataat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27183855 |
ttgagaggaagaaaatacaagaaaagagagacagagagagataacacactaagttttgtataaatcagacatgtgagtaattaaagtataaaacaataat |
27183756 |
T |
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| Q |
209 |
gttttgtgagtcattat |
225 |
Q |
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||||||||||||||||| |
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| T |
27183755 |
gttttgtgagtcattat |
27183739 |
T |
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Back To:
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