View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16027_high_2 (Length: 714)

Name: NF16027_high_2
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16027_high_2
NF16027_high_2
[»] chr3 (3 HSPs)
chr3 (338-697)||(48236031-48236390)
chr3 (12-329)||(48236418-48236735)
chr3 (382-440)||(25252041-25252099)
[»] chr6 (1 HSPs)
chr6 (365-441)||(2732920-2732996)
[»] chr1 (5 HSPs)
chr1 (137-193)||(3685864-3685920)
chr1 (611-670)||(3686383-3686442)
chr1 (381-442)||(6025970-6026031)
chr1 (409-442)||(33651683-33651716)
chr1 (381-442)||(44417797-44417858)
[»] chr7 (1 HSPs)
chr7 (377-441)||(1110409-1110473)
[»] scaffold0491 (1 HSPs)
scaffold0491 (378-422)||(4388-4432)
[»] chr8 (2 HSPs)
chr8 (378-422)||(18737689-18737733)
chr8 (380-442)||(42843363-42843425)
[»] chr5 (1 HSPs)
chr5 (358-438)||(43283418-43283498)
[»] chr4 (1 HSPs)
chr4 (367-442)||(415131-415206)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 338 - 697
Target Start/End: Complemental strand, 48236390 - 48236031
Alignment:
Q  338 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaa 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48236390 aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcactgttatttcgggatatgctatttagtgtaaaatgttgtcaa 48236291  T
Q  438 atagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttcttaaactttgactgc 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236290 atagtagcagcacgctataacattgttatgcagcggagtttgaacaaattgctattgacaacgtttgtttacctttttccacttcttaaactttgactgc 48236191  T
Q  538 cactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctccttacgtgcacaggttgaggtactaagcagtattagac 637  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48236190 cactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctccttacatgcacaggttgaggtactaagcagtattagac 48236091  T
Q  638 atccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagt 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236090 atccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagt 48236031  T

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Target: chr3; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 329
Target Start/End: Complemental strand, 48236735 - 48236418
Alignment:
Q  12 gagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236735 gagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattg 48236636  T
Q  112 aagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48236635 aagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatacggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaa 48236536  T
Q  212 actcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgtatcaacattttttctttgtaccctaaatattaaccattt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48236535 actcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgcatcaacattttttctttgtaccctaaatattaaccattt 48236436  T
Q  312 aataatgcaaattttccc 329  Q
    ||||||||||||||||||    
T  48236435 aataatgcaaattttccc 48236418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 25252041 - 25252099
Alignment:
Q  382 atttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaata 440  Q
    |||||||||||||||| || ||||| |||| ||||||||||  ||||||||||| ||||    
T  25252041 atttgaacaaatcgctcttgtttcgtgatacgctatttagtacaaaatgttgtctaata 25252099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 2732920 - 2732996
Alignment:
Q  365 cactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 441  Q
    ||||||| | ||| ||||||||||||||||||| || ||| | |||||||||||||||  |||||||||||||||||    
T  2732920 cactatagcgtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatag 2732996  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 3685864 - 3685920
Alignment:
Q  137 atcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatca 193  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3685864 atcaatgaaaataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatca 3685920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 670
Target Start/End: Original strand, 3686383 - 3686442
Alignment:
Q  611 aggttgaggtactaagcagtattagacatccaaatatggtcctcctccttggagcatgtc 670  Q
    ||||||||||| || |||  || |||||||| |||||||||||||||||||| |||||||    
T  3686383 aggttgaggtattatgcaacataagacatcccaatatggtcctcctccttggtgcatgtc 3686442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 6026031 - 6025970
Alignment:
Q  381 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 442  Q
    ||||||||||||| | | || || || |||||||||||||||  ||||||||||||||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagt 6025970  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 442
Target Start/End: Original strand, 33651683 - 33651716
Alignment:
Q  409 atatgctatttagtgtaaaatgttgtcaaatagt 442  Q
    |||||||||||||| |||||||||||||||||||    
T  33651683 atatgctatttagtataaaatgttgtcaaatagt 33651716  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 44417797 - 44417858
Alignment:
Q  381 aatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 442  Q
    |||||||||||| || | || ||| |||||||| ||||||||| ||| ||||||||||||||    
T  44417797 aatttgaacaaaccgttattgttttgggatatgttatttagtgcaaagtgttgtcaaatagt 44417858  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 1110473 - 1110409
Alignment:
Q  377 gcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatag 441  Q
    ||||||||||||||||| ||| || |||||||||||||||||||||   || |||||||||||||    
T  1110473 gcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatag 1110409  T

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Target: scaffold0491 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 4388 - 4432
Alignment:
Q  378 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 422  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  4388 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 4432  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 422
Target Start/End: Original strand, 18737689 - 18737733
Alignment:
Q  378 cgaaatttgaacaaatcgctgttatttcgggatatgctatttagt 422  Q
    |||||||||||||||| ||| || |||||||||||||||||||||    
T  18737689 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 18737733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 380 - 442
Target Start/End: Original strand, 42843363 - 42843425
Alignment:
Q  380 aaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 442  Q
    |||||||||||||| ||| || || ||||||| |||||| ||| |||| ||||||||||||||    
T  42843363 aaatttgaacaaattgctattgttccgggataagctattaagtataaattgttgtcaaatagt 42843425  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 438
Target Start/End: Complemental strand, 43283498 - 43283418
Alignment:
Q  358 gctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaa 438  Q
    ||||| |||||||| ||||||| |||||||||||||||||||| || ||  ||| ||||||| |   ||||||||||||||    
T  43283498 gctatagcactatagcatagcgtaatttgaacaaatcgctgttgttccgcaatacgctatttgggacaaaatgttgtcaaa 43283418  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 415131 - 415206
Alignment:
Q  367 ctataacatagcgaaatttgaacaaatcgctgttatttcgggatatgctatttagtgtaaaatgttgtcaaatagt 442  Q
    ||||| ||||||  ||||||||||| ||||| || ||||| ||| |||||||||||  |||||||||| |||||||    
T  415131 ctatagcatagcagaatttgaacaagtcgctattgtttcgtgatttgctatttagtacaaaatgttgtgaaatagt 415206  T

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