View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16027_low_1 (Length: 745)

Name: NF16027_low_1
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16027_low_1
NF16027_low_1
[»] chr6 (16 HSPs)
chr6 (324-722)||(23258001-23258399)
chr6 (338-722)||(23247613-23247995)
chr6 (338-724)||(23252023-23252407)
chr6 (466-724)||(23266554-23266812)
chr6 (22-198)||(23258522-23258699)
chr6 (607-724)||(23283672-23283789)
chr6 (577-724)||(23289985-23290132)
chr6 (326-433)||(23266804-23266911)
chr6 (592-698)||(23391480-23391586)
chr6 (574-724)||(23587141-23587291)
chr6 (591-724)||(23583257-23583390)
chr6 (595-724)||(23634175-23634304)
chr6 (595-724)||(23506995-23507124)
chr6 (577-695)||(23594236-23594354)
chr6 (260-303)||(23258418-23258461)
chr6 (260-300)||(23266934-23266974)


Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 324 - 722
Target Start/End: Complemental strand, 23258399 - 23258001
Alignment:
Q  324 ttacaaatactctacctgttaccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaact 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258399 ttacaaatactctacctgttaccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaact 23258300  T
Q  424 ctctctccaattgccacttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattc 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258299 ctctctccaattgccacttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattc 23258200  T
Q  524 cctcaacagcatcttcttcgtatgacacgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaa 623  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258199 cctcaacagcatcttcttcgtatgacatgtcaactccgaattcggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaa 23258100  T
Q  624 ggaaactcgccacccgatgtataggggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggct 722  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23258099 ggaaactcgccacccgatgtatagaggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggct 23258001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 338 - 722
Target Start/End: Complemental strand, 23247995 - 23247613
Alignment:
Q  338 cctgttaccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactctctctccaattgc 437  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||| |    
T  23247995 cctgttaccttattctttccttcaaacacaacaatgcttccctatatatataacacaccttactcttcattctcttaaaacaaa--ctctctccaattcc 23247898  T
Q  438 cacttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatct 537  Q
    |||||| ||||| ||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||| ||  | |    
T  23247897 cactttacctctcaaaaccattttccactctatccaacacatacatatgattagtactaacaactcttcctattcacactccatttcctcaaaagatttt 23247798  T
Q  538 tcttcgtatgacacgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacc 637  Q
    ||| | |  ||| | ||| | |||  ||  ||||| || |||||  | |||||||| ||||||||||||||||||||||| || ||||||||||||||||    
T  23247797 tctcccttcgacgcatcatcaccgggttctgaggtgcggttagcatcaagtaacccgaagaagcgagcagggaggaagatatttaaggaaactcgccacc 23247698  T
Q  638 cgatgtataggggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggct 722  Q
    || | ||||| ||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||||||  |||||||||||    
T  23247697 cggtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggct 23247613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 338 - 724
Target Start/End: Complemental strand, 23252407 - 23252023
Alignment:
Q  338 cctgttaccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactctctctccaattgc 437  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||| |    
T  23252407 cctgttgccttattctttccttcaaacacaactatgcttccctatatatataacacaccttactcttcattctcttaaaacaaa--ctctctccaattac 23252310  T
Q  438 cacttttcctcttaaaacaattttccactctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatct 537  Q
    |||||| ||||| ||||| |||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||| |||||| |||||| ||  | |    
T  23252309 cactttacctctcaaaaccattttccactctatccaacacatacatatgataagtactaacaactcttcctattcacactccatttcctcaaaagatttt 23252210  T
Q  538 tcttcgtatgacacgtcaactccgaatttggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacc 637  Q
    ||| | |  ||| | ||| | ||| |||  ||||| || |||||  | || ||||| |||||| |||| ||||||||||| || ||||||||||| ||||    
T  23252209 tctcccttcgacgcatcatcaccggattctgaggtgcggttagcatcaagcaacccgaagaagagagcggggaggaagatatttaaggaaactcgtcacc 23252110  T
Q  638 cgatgtataggggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctag 724  Q
    |  | ||||| ||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||||||  |||||||||||||    
T  23252109 ctgtctatagaggtgtgaggaagaggaacttaaataaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctag 23252023  T

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Target: chr6; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 466 - 724
Target Start/End: Complemental strand, 23266812 - 23266554
Alignment:
Q  466 tctctccaacacatacatatgtttactactaacaactcttcctattcacaatccattccctcaacagcatcttcttcgtatgacacgtcaactccgaatt 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||| ||  | |  |||   ||| | |    
T  23266812 tctctccaacacatacatatgtttactactaacaactcttcctattcacactccatttcctcagaagcatcttcttcctactataactcattaccggaat 23266713  T
Q  566 tggaggtacgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtataggggtgtgaggaagaggaa 665  Q
     |||| |||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  23266712 cggagatacgattagcagctagtaacccgaagaagagagcagggaggaagatattcaaggaaactcgccacccggtgtatagaggtgtaaggaagaggaa 23266613  T
Q  666 cttagataaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctag 724  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||    
T  23266612 cttagataaatgggtttgtgaaatgagggaacccaacacgaagactagaatttggctag 23266554  T

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Target: chr6; HSP #5
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 23258699 - 23258522
Alignment:
Q  22 gcgcaatcaataacatgtgggtttgaaagggatggagagccaaaaagagtaaattcctctgaatcatataataaccttgtatagtgacgcagcaatagat 121  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  23258699 gcgcaatcagtaacatgtgggtttgaaagggatggagagccaaaaatagtaaattcctctgaatcatataataaccttgtatagtgacgcagc-gtagat 23258601  T
Q  122 attttgataacatgcct--taaaataaaataaaatagaaagaggatattttaataaccttgttcattttgagccaagtg 198  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23258600 attttcataacatgccttataaaataaaataaaatagaaagaggatattttgataaccttgttcattttgagccaagtg 23258522  T

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Target: chr6; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 607 - 724
Target Start/End: Complemental strand, 23283789 - 23283672
Alignment:
Q  607 gggaggaagatcttcaaggaaactcgccacccgatgtataggggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgagggaacccaacacaa 706  Q
    ||||||||||  || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  23283789 gggaggaagaagtttaaggagactcgccacccggtgtataggggtgtgaggaagaggaacttagataaatgggtttgtgaaatgagggaacccaacaaaa 23283690  T
Q  707 agaccaggatttggctag 724  Q
    |||| |||||||||||||    
T  23283689 agactaggatttggctag 23283672  T

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Target: chr6; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 577 - 724
Target Start/End: Complemental strand, 23290132 - 23289985
Alignment:
Q  577 ttagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtataggggtgtgaggaagaggaacttagataaat 676  Q
    |||||||| |||  |||||| || | ||||||||||||||  || ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  23290132 ttagcggcgagttgcccaaaaaaaccagcagggaggaagaagtttaaggagactcgccacccggtgtatagaggtgtgaggaagaggaacttagataaat 23290033  T
Q  677 gggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctag 724  Q
    |||||||||||||||||||||| || |  ||||| |||||||||||||    
T  23290032 gggtgtgtgaaatgagggaaccaaataagaagactaggatttggctag 23289985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 326 - 433
Target Start/End: Complemental strand, 23266911 - 23266804
Alignment:
Q  326 acaaatactctacctgttaccttattctttccttcaaactcaactatgcttccctatatatataacacaccttactcttcattctcttaaaaacaactct 425  Q
    ||||| ||||| ||||||||||||||||||||||||||  ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| |    
T  23266911 acaaacactctgcctgttaccttattctttccttcaaaaccaagtatgcttcactatatatgtaacacaccttactcttcattctcttaaaaacaactat 23266812  T
Q  426 ctctccaa 433  Q
    ||||||||    
T  23266811 ctctccaa 23266804  T

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Target: chr6; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 592 - 698
Target Start/End: Complemental strand, 23391586 - 23391480
Alignment:
Q  592 ccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtataggggtgtgaggaagaggaacttagataaatgggtgtgtgaaatga 691  Q
    ||||||||||| |||||||||||||  |||||||| |||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  23391586 ccaaagaagcgtgcagggaggaagaagttcaaggagactcgccacccggtatataggggtgtgaggaaaagaaacttagataaatgggtgtgtgaaatga 23391487  T
Q  692 gggaacc 698  Q
    |||||||    
T  23391486 gggaacc 23391480  T

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Target: chr6; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 574 - 724
Target Start/End: Complemental strand, 23587291 - 23587141
Alignment:
Q  574 cgattagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtataggggtgtgaggaagaggaacttagata 673  Q
    ||||||||||| | || ||| |||||||| |||||||||||||  ||||||||||||||||||||  | ||||| || ||||||||||||||||||||||    
T  23587291 cgattagcggcaactaccccgaagaagcgtgcagggaggaagaagttcaaggaaactcgccacccagtctatagaggagtgaggaagaggaacttagata 23587192  T
Q  674 aatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctag 724  Q
    ||||||| |||||||||||||| || ||||  ||||| | |||||||||||    
T  23587191 aatgggtttgtgaaatgagggagcctaacaagaagactaagatttggctag 23587141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 591 - 724
Target Start/End: Complemental strand, 23583390 - 23583257
Alignment:
Q  591 cccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtataggggtgtgaggaagaggaacttagataaatgggtgtgtgaaatg 690  Q
    |||||||||||| |||||||||||||  |||||||| |||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  23583390 cccaaagaagcgtgcagggaggaagaagttcaaggagactcgccacccggtctataggggtgtaaggaagaggaacttagataaatgggtttgtgaaatg 23583291  T
Q  691 agggaacccaacacaaagaccaggatttggctag 724  Q
    ||| | || ||||  ||||| | |||||||||||    
T  23583290 aggaagcctaacaagaagactaagatttggctag 23583257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 595 - 724
Target Start/End: Complemental strand, 23634304 - 23634175
Alignment:
Q  595 aagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtataggggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgaggg 694  Q
    |||||||| |||||||||||||  |||||||| || ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23634304 aagaagcgtgcagggaggaagaagttcaaggagacacgccacccggtgtacaggggtgtgaggaggaggaacttagataaatgggtgtgtgaaatgaggg 23634205  T
Q  695 aacccaacacaaagaccaggatttggctag 724  Q
    | || ||||  ||||| | |||||||||||    
T  23634204 agcctaacaagaagactaagatttggctag 23634175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 595 - 724
Target Start/End: Complemental strand, 23507124 - 23506995
Alignment:
Q  595 aagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtataggggtgtgaggaagaggaacttagataaatgggtgtgtgaaatgaggg 694  Q
    |||||||| | |||||||||||  ||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||||||||||||| ||      
T  23507124 aagaagcgtggagggaggaagaaattcaaggaaactcgccacccggtgtataggggtgtgaggagtaggaacctagataaatgggtgtgtgaaataagac 23507025  T
Q  695 aacccaacacaaagaccaggatttggctag 724  Q
    | || |||| |||||||| |||||||||||    
T  23507024 agcctaacaaaaagaccaagatttggctag 23506995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 577 - 695
Target Start/End: Complemental strand, 23594354 - 23594236
Alignment:
Q  577 ttagcggctagtaacccaaagaagcgagcagggaggaagatcttcaaggaaactcgccacccgatgtataggggtgtgaggaagaggaacttagataaat 676  Q
    ||||| || |||| |||||||||||| ||| | || ||||  |||||||  ||| |||||||||| ||||||||||||||||  ||||| |||| |||||    
T  23594354 ttagctgcaagtaccccaaagaagcgtgcatgcagaaagaagttcaaggtgacttgccacccgatctataggggtgtgaggagtaggaatttaggtaaat 23594255  T
Q  677 gggtgtgtgaaatgaggga 695  Q
    |||||||||||||||||||    
T  23594254 gggtgtgtgaaatgaggga 23594236  T

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Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 23258461 - 23258418
Alignment:
Q  260 ttgataaccaatcacaaagcctccaacttgggaaatagctcact 303  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  23258461 ttgataaccaatcacacagcctccaacttgggaaatagctcact 23258418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 23266974 - 23266934
Alignment:
Q  260 ttgataaccaatcacaaagcctccaacttgggaaatagctc 300  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  23266974 ttgataaccaatcacaaagcctccaacttaggaaatagctc 23266934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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