View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16027_low_13 (Length: 257)
Name: NF16027_low_13
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16027_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7727343 - 7727583
Alignment:
| Q |
1 |
accccagccacggctgatggtgaccacggtgattcggccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7727343 |
accccagccacggctgatggtgacgacggtgattcggccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtactgttgtcc |
7727442 |
T |
|
| Q |
101 |
caatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatcatcagcat |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
7727443 |
caatcggagaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcattgcaggagaactcaacatcatcagcat |
7727542 |
T |
|
| Q |
201 |
ttgatgtggagaagtagattgaagaaaggaagagaagtgtt |
241 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7727543 |
ttgatgtggagaagtagatggaagaaaggaagagaagtgtt |
7727583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7731503 - 7731742
Alignment:
| Q |
1 |
accccagccacggctgatggtgaccacggtgattcggccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcc |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7731503 |
accccagccacggctgatggtgacgacggtgattcggccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcc |
7731602 |
T |
|
| Q |
101 |
caatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatcatcagcat |
200 |
Q |
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| T |
7731603 |
caatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcat |
7731702 |
T |
|
| Q |
201 |
ttgatgtggagaagtagattgaagaaaggaagagaagtgt |
240 |
Q |
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||||||||||||||||||| |||||||||||||| ||||| |
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| T |
7731703 |
ttgatgtggagaagtagatggaagaaaggaagaggagtgt |
7731742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7739661 - 7739900
Alignment:
| Q |
1 |
accccagccacggctgatggtgaccacggtgattcggccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcc |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7739661 |
accccagccacggctgatggtgacgacggtgattcggccaggtaggggtttaccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcc |
7739760 |
T |
|
| Q |
101 |
caatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatcatcagcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
7739761 |
caatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagggtggctttgtcattggcgttgcaggagaactcaacatcatcagcat |
7739860 |
T |
|
| Q |
201 |
ttgatgtggagaagtagattgaagaaaggaagagaagtgt |
240 |
Q |
| |
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||||||||||||||||||| |||||||||||||| ||||| |
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| T |
7739861 |
ttgatgtggagaagtagatggaagaaaggaagaggagtgt |
7739900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7699481 - 7699715
Alignment:
| Q |
1 |
accccagccacggctgatggtgaccacggtgattcggccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcc |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||||| ||| |||| || ||||||||||||||||| |||||| || || ||||||| |
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| T |
7699481 |
accccagccacggctgatggtgacgacggtgactcggccaggataaggtctgccgcaaccgacgaagctccagtc---acaacattcggtgttgttgtcc |
7699577 |
T |
|
| Q |
101 |
caatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatcatcagcat |
200 |
Q |
| |
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|| ||| |||||||| ||||| || |||||||||||||||||||||||||| | ||||||||| | ||||||||| |||| | ||||| || | |
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| T |
7699578 |
cagtcgtcgaggcggcctttgggaccaccgaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt---catcacttgcgt |
7699674 |
T |
|
| Q |
201 |
ttgatgtggagaagtagattgaagaaaggaagagaagtgtt |
241 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
7699675 |
ttgatttggagaagtagatggaagaaaggaagagaagtgtt |
7699715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 7713826 - 7714052
Alignment:
| Q |
1 |
accccagccacggctgatggtgaccacggtgattcggccaggtaggggtttgccacacccgacgaagctccagtcgctacaacagtctgtaccgttgtcc |
100 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| ||||||||| ||| |||| || || |||||| ||||||| |||||| || || ||||||| |
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| T |
7713826 |
accccagccacggccgatggtgacgccggtgactcggccaggataaggtctgccgcaacctacgaagttccagtc---acaacattcagtgttgttgtcc |
7713922 |
T |
|
| Q |
101 |
caatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattggcgttgcaagagaactctacatcatcagcat |
200 |
Q |
| |
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|| ||| ||| |||||||| |||||||| ||||||||||||||||||||||| | ||||||||| | ||||||||| |||| | ||||| || | |
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| T |
7713923 |
cagtcgtcaagacggccgttagggccgccaaaatggtctctgattttgaggagggcggctttgtcgtcggcgttgcagaagaagt---catcacttgcgt |
7714019 |
T |
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| Q |
201 |
ttgatgtggagaagtagattgaagaaaggaaga |
233 |
Q |
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||||| ||||||||||||| ||||||||||||| |
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| T |
7714020 |
ttgatttggagaagtagatggaagaaaggaaga |
7714052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 12907901 - 12907809
Alignment:
| Q |
78 |
tacaacagtctgtaccgttgtcccaatcggaaaggcggccgttggggccgccgaaatggtctctgattttgaggagagtggctttgtcattgg |
170 |
Q |
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|||||||||||| | | ||| ||| ||||| ||| | ||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||| |
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| T |
12907901 |
tacaacagtctgcattggtgtgccagtcggataggggtccgttagggccgccgaaatggtctcttattttgaggagagcagctttatcattgg |
12907809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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