View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16027_low_18 (Length: 234)

Name: NF16027_low_18
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16027_low_18
NF16027_low_18
[»] chr6 (12 HSPs)
chr6 (1-223)||(23257709-23257931)
chr6 (1-223)||(23247321-23247543)
chr6 (1-205)||(23251751-23251955)
chr6 (5-223)||(23266270-23266482)
chr6 (1-147)||(23283458-23283604)
chr6 (5-125)||(23633983-23634103)
chr6 (5-135)||(23506631-23506761)
chr6 (5-128)||(23506800-23506923)
chr6 (172-223)||(23283340-23283391)
chr6 (172-223)||(23289680-23289731)
chr6 (64-144)||(23391243-23391323)
chr6 (5-128)||(23289790-23289913)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23257931 - 23257709
Alignment:
Q  1 ctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaa 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23257931 ctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaa 23257832  T
Q  101 gcttttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23257831 gcttttagaccagacaagactttaatgattaatgatattgacaccgtagtacctgtcgtggccacaaaggagttgaatatgttttgtgtggaagtcgaag 23257732  T
Q  201 aagagcaggaaatgttgaatatg 223  Q
    |||||||||||||||||||||||    
T  23257731 aagagcaggaaatgttgaatatg 23257709  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23247543 - 23247321
Alignment:
Q  1 ctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaa 100  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||| |  |||| ||||||    
T  23247543 ctatgcctgtctcaatttctcagactcggtgtggcgccttcctattccagcaacttccgcaataaaagatattcaaaaggcagctacaaaagcggccgaa 23247444  T
Q  101 gcttttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcgaag 200  Q
    ||||||||||||||||| |||||||||| |||  ||||||||||  |||||  |||||  |||||||||||| |||||||||||||||||||||| || |    
T  23247443 gcttttagaccagacaatactttaatgactaacaatattgacactatcgtagatgtcgtcgccacaaaggagctgaatatgttttgtgtggaagttgatg 23247344  T
Q  201 aagagcaggaaatgttgaatatg 223  Q
    || || |||||||||||||||||    
T  23247343 aacaggaggaaatgttgaatatg 23247321  T

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Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 23251955 - 23251751
Alignment:
Q  1 ctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaa 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| |  |||| ||||||    
T  23251955 ctatgcctgtctcaattttgcagactcggtgtggcgccttcctattccagcaacttccgcgataaaagatattcaaaaggcagctacaaaagccgccgaa 23251856  T
Q  101 gcttttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcgaag 200  Q
    ||||||||||||||||| ||||||||||  | ||| ||||||||||| ||| |||| |  || ||| ||||| ||||||||||| |||| ||||||||||    
T  23251855 gcttttagaccagacaatactttaatgaccagtgacattgacaccgttgtagctgttgtcgcaacacaggagctgaatatgtttcgtgttgaagtcgaag 23251756  T
Q  201 aagag 205  Q
    |||||    
T  23251755 aagag 23251751  T

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Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 23266482 - 23266270
Alignment:
Q  5 gcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagctt 104  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| ||| |  |||| ||||||||||    
T  23266482 gcctgtctcaattttgcagattcggtgtggcggcttcctattccagcaacttcctcaataaaagatattcaaaaggcagctacaaaagccgccgaagctt 23266383  T
Q  105 ttagaccagacaagactttaatgattaatgatattgacaccgtcgtacctgtcgcggccacaaaggagttgaatatgttttgtgtggaagtcgaagaaga 204  Q
    ||||||||||||| ||| |||||||||   | ||||| || || ||| |||| |  |||||||||||||||||||||||||||||||||   |||||||     
T  23266382 ttagaccagacaatactataatgattaccaacattgagactgttgtagctgttgtcgccacaaaggagttgaatatgttttgtgtggaa---gaagaag- 23266287  T
Q  205 gcaggaaatgttgaatatg 223  Q
      |||||||||||||||||    
T  23266286 --aggaaatgttgaatatg 23266270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 23283604 - 23283458
Alignment:
Q  1 ctatgcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgc-gat--aaaagatattcaaaaggcggctgctgaagctgcc 97  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||| |   | ||||| ||   |||||| ||||||| ||| ||||| ||||| |||    
T  23283604 ctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctg---cctccgctgaagcaaaagacattcaaagggcagctgcagaagccgcc 23283508  T
Q  98 gaagcttttagaccagacaagactttaatgattaatgatattgacaccgt 147  Q
    || ||||| |||||||||||||||||||||| ||| || |||||||||||    
T  23283507 gaggctttcagaccagacaagactttaatgactaacgacattgacaccgt 23283458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 23634103 - 23633983
Alignment:
Q  5 gcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagctt 104  Q
    |||||||| |||||||| ||||| |  | ||||||||||||||| |  ||| | | || || |||||| |||||| ||||||| ||||||||||| ||||    
T  23634103 gcctgtcttaattttgctgactctgcctcgcggcttcctattcctgccactacagagacaagagatatacaaaagacggctgcagaagctgccgaggctt 23634004  T
Q  105 ttagaccagacaagactttaa 125  Q
    | |||||||||||||||||||    
T  23634003 tcagaccagacaagactttaa 23633983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 23506761 - 23506631
Alignment:
Q  5 gcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagctt 104  Q
    ||||||||||| |||||||||||||  | ||||||||||||||| |  |||   | || || |||||| ||||| |||||||| |||||| | || ||||    
T  23506761 gcctgtctcaactttgcagactcggcctcgcggcttcctattcctgccactaaagagacaagagatatacaaaacgcggctgcagaagctactgaggctt 23506662  T
Q  105 ttagaccagacaagactttaatgattaatga 135  Q
    | ||||||||||||||||||| || ||||||    
T  23506661 tcagaccagacaagactttaacgactaatga 23506631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 23506923 - 23506800
Alignment:
Q  5 gcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgcgataaaagatattcaaaaggcggctgctgaagctgccgaagctt 104  Q
    ||||||||||| |||||||||||||  | |  ||| |||||||| |  |||| || || ||||||||| |||||| |||||||||||||||| || || |    
T  23506923 gcctgtctcaactttgcagactcggccttgacgctccctattcctgctacttgcgagacaaaagatatacaaaagacggctgctgaagctgctgaggcat 23506824  T
Q  105 ttagaccagacaagactttaatga 128  Q
    | ||||||| ||||||| ||||||    
T  23506823 tcagaccaggcaagactgtaatga 23506800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 23283391 - 23283340
Alignment:
Q  172 gttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatg 223  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||||||||||    
T  23283391 gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatg 23283340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 23289731 - 23289680
Alignment:
Q  172 gttgaatatgttttgtgtggaagtcgaagaagagcaggaaatgttgaatatg 223  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||||||||||    
T  23289731 gttgaatatgttttgtgtggaagtcgaaaaagaagaggaagtgttgaatatg 23289680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 23391323 - 23391243
Alignment:
Q  64 aaaagatattcaaaaggcggctgctgaagctgccgaagcttttagaccagacaagactttaatgattaatgatattgacac 144  Q
    ||||||||| ||||||||||||||  | || || || ||||| |||||||||||||||| ||| | |||||| ||||||||    
T  23391323 aaaagatatacaaaaggcggctgcacaggccgctgaggctttcagaccagacaagacttcaattactaatgacattgacac 23391243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 23289913 - 23289790
Alignment:
Q  5 gcctgtctcaattttgcagactcggtgtggcggcttcctattccagtaacttccgc-gat--aaaagatattcaaaaggcggctgctgaagctgccgaag 101  Q
    ||||||||||| ||||||||||||| ||||  |||||||||||| |   | ||||| ||   |||||| ||||||| ||| ||||  ||||| || || |    
T  23289913 gcctgtctcaactttgcagactcggcgtggaagcttcctattcctg---cctccgctgaagcaaaagacattcaaagggcagctggagaagccgctgagg 23289817  T
Q  102 cttttagaccagacaagactttaatga 128  Q
    |||| ||||||||||||||||||||||    
T  23289816 ctttcagaccagacaagactttaatga 23289790  T

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