View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16027_low_20 (Length: 221)

Name: NF16027_low_20
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16027_low_20
NF16027_low_20
[»] chr5 (7 HSPs)
chr5 (30-123)||(37022786-37022879)
chr5 (53-123)||(20645585-20645655)
chr5 (63-126)||(32274977-32275040)
chr5 (68-123)||(2866764-2866819)
chr5 (63-125)||(17549413-17549473)
chr5 (85-123)||(16717226-16717264)
chr5 (85-123)||(19645479-19645517)
[»] chr6 (6 HSPs)
chr6 (20-123)||(19292649-19292753)
chr6 (83-123)||(19078684-19078724)
chr6 (52-123)||(34884301-34884373)
chr6 (68-123)||(30590215-30590270)
chr6 (83-128)||(3419234-3419279)
chr6 (63-123)||(26229448-26229508)
[»] scaffold0006 (1 HSPs)
scaffold0006 (20-123)||(230545-230649)
[»] chr7 (12 HSPs)
chr7 (20-122)||(49016809-49016912)
chr7 (20-120)||(27400510-27400611)
chr7 (54-120)||(23328942-23329008)
chr7 (52-96)||(11907589-11907633)
chr7 (53-124)||(4038553-4038624)
chr7 (63-125)||(15234660-15234720)
chr7 (63-123)||(14784628-14784689)
chr7 (54-123)||(21267826-21267895)
chr7 (85-126)||(40954848-40954889)
chr7 (85-126)||(44629533-44629574)
chr7 (83-123)||(1075779-1075819)
chr7 (52-123)||(17756862-17756934)
[»] chr1 (8 HSPs)
chr1 (22-123)||(39864681-39864784)
chr1 (52-124)||(16632108-16632180)
chr1 (68-123)||(3712802-3712857)
chr1 (68-123)||(47476557-47476612)
chr1 (53-123)||(25160455-25160525)
chr1 (52-125)||(50432564-50432637)
chr1 (68-124)||(25244869-25244925)
chr1 (85-121)||(28702233-28702269)
[»] chr8 (5 HSPs)
chr8 (20-123)||(412195-412299)
chr8 (20-124)||(19922230-19922337)
chr8 (20-123)||(39580590-39580694)
chr8 (26-124)||(8643253-8643352)
chr8 (85-122)||(24887989-24888026)
[»] chr4 (7 HSPs)
chr4 (20-123)||(22910777-22910881)
chr4 (20-123)||(22967641-22967745)
chr4 (53-123)||(27993623-27993693)
chr4 (22-123)||(31835465-31835567)
chr4 (24-120)||(42841700-42841797)
chr4 (68-123)||(55406473-55406528)
chr4 (55-120)||(35187335-35187400)
[»] chr3 (9 HSPs)
chr3 (20-120)||(50769955-50770056)
chr3 (24-122)||(27813716-27813815)
chr3 (53-121)||(47278050-47278118)
chr3 (68-123)||(2455953-2456008)
chr3 (84-123)||(47648996-47649035)
chr3 (85-123)||(43788859-43788897)
chr3 (63-123)||(19466133-19466193)
chr3 (83-123)||(25644900-25644940)
chr3 (83-123)||(47100144-47100184)
[»] chr2 (6 HSPs)
chr2 (20-120)||(26823101-26823202)
chr2 (52-123)||(43822599-43822670)
chr2 (85-126)||(9615679-9615720)
chr2 (68-123)||(40934653-40934708)
chr2 (83-123)||(4580554-4580594)
chr2 (83-123)||(13764901-13764941)
[»] scaffold0648 (1 HSPs)
scaffold0648 (54-123)||(4373-4442)
[»] scaffold0274 (1 HSPs)
scaffold0274 (54-123)||(3843-3912)
[»] scaffold0293 (1 HSPs)
scaffold0293 (39-96)||(1049-1106)
[»] scaffold0015 (1 HSPs)
scaffold0015 (53-126)||(64720-64793)
[»] scaffold0001 (1 HSPs)
scaffold0001 (83-123)||(181810-181850)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 37022879 - 37022786
Alignment:
Q  30 accagtttgcaatattgattaattttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37022879 accagtttgcaatattgattaattttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 37022786  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 20645655 - 20645585
Alignment:
Q  53 tttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||| ||||||||||||||||| || |||||||||| ||  ||||||||||||||||||||||||||    
T  20645655 tttgaaacattttagtatatattctacaaatatttggcactccttagaaataaactcaagatccgccactg 20645585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 32275040 - 32274977
Alignment:
Q  63 tttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactgttt 126  Q
    |||| ||||||||  |||| | ||||||| |||||||||| |||||||||||||||||||||||    
T  32275040 tttaatatatatttcaaaaatgtttggcatccccaagaaaaaaactcaagatccgccactgttt 32274977  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 2866819 - 2866764
Alignment:
Q  68 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| |||||||||||||||  ||| ||  ||||||||||||||||    
T  2866819 tatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactg 2866764  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 17549413 - 17549473
Alignment:
Q  63 tttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactgtt 125  Q
    |||| |||||||||| ||| ||||||||||||||  |||| ||||||||||||||||| ||||    
T  17549413 tttaatatatattcttaaaatatttggcaccccc--gaaaaaaactcaagatccgccattgtt 17549473  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 16717226 - 16717264
Alignment:
Q  85 tttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  16717226 tttggcacccccaacaaattaactcaagatccgccactg 16717264  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 19645479 - 19645517
Alignment:
Q  85 tttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  19645479 tttggcacccccaacaaattaactcaagatccgccactg 19645517  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 19292753 - 19292649
Alignment:
Q  20 gtaccatcacaccagtttgcaatattgattaatttt-gaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  19292753 gtaccatcacaccaatttgcaatattgattaatttttgaaacgttttagtatatattctaaaactctttggcacccccgagaaataaactcaagatccgc 19292654  T
Q  119 cactg 123  Q
    |||||    
T  19292653 cactg 19292649  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 19078724 - 19078684
Alignment:
Q  83 tatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  19078724 tatttggcacccccaagaaagaaacttaagatccgccactg 19078684  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 34884373 - 34884301
Alignment:
Q  52 ttttgaaacgttttagtatatattctaaaactatttggcaccccc-aagaaataaactcaagatccgccactg 123  Q
    |||||||||  |||| ||||||||||  || |||||||||||||| || ||| ||||||||||||||||||||    
T  34884373 ttttgaaactgtttaatatatattcttcaaatatttggcacccccgaaaaaaaaaactcaagatccgccactg 34884301  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 30590270 - 30590215
Alignment:
Q  68 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||  | |||||||||||||||| |||  |||||||||||||||||||    
T  30590270 tatatattctacgaatatttggcacccccaaaaaaataactcaagatccgccactg 30590215  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 3419234 - 3419279
Alignment:
Q  83 tatttggcacccccaagaaataaactcaagatccgccactgtttct 128  Q
    |||||||||||||| | ||| |||||||||||||||||||| ||||    
T  3419234 tatttggcacccccgaaaaaaaaactcaagatccgccactgattct 3419279  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 26229448 - 26229508
Alignment:
Q  63 tttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||| ||||||||||  || |||||| ||||||||| ||||| ||| ||||||||||||||    
T  26229448 tttaatatatattcttcaaatatttgacacccccaaaaaatatacttaagatccgccactg 26229508  T

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Target: scaffold0006 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 230545 - 230649
Alignment:
Q  20 gtaccatcacaccagtttgcaatatt-gattaattttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    |||||||||||||||||||||| |||  ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  230545 gtaccatcacaccagtttgcaaaattatatattttttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 230644  T
Q  119 cactg 123  Q
    |||||    
T  230645 cactg 230649  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 49016912 - 49016809
Alignment:
Q  20 gtaccatcacaccagtttgcaatattgatta-attttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    |||||||||||||| ||| ||||||||  || |||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||     
T  49016912 gtaccatcacaccaatttacaatattgtatatattttgaaacgttttagtatatattctaaaactatttgacacccccgaaaaataaactcaagatccgt 49016813  T
Q  119 cact 122  Q
    ||||    
T  49016812 cact 49016809  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 27400510 - 27400611
Alignment:
Q  20 gtaccatcacaccagtttgcaatattgattaa-ttttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    ||||||| |||||| ||||||||||||| ||  |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||    
T  27400510 gtaccataacaccaatttgcaatattgaatatcttttgaaacgttttagtaaatattctaagactatttggcacccccgagaaataaactcaagatctgc 27400609  T
Q  119 ca 120  Q
    ||    
T  27400610 ca 27400611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 23328942 - 23329008
Alignment:
Q  54 ttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgcca 120  Q
    ||||||| ||||||||||||||||| || |||||||||||| | |||||||||||||||||||||||    
T  23328942 ttgaaactttttagtatatattctacaaatatttggcaccctcgagaaataaactcaagatccgcca 23329008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 11907633 - 11907589
Alignment:
Q  52 ttttgaaacgttttagtatatattctaaaactatttggcaccccc 96  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||    
T  11907633 ttttgaaacgttttagtatatgttctaaaaatatttggcaccccc 11907589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 4038553 - 4038624
Alignment:
Q  53 tttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactgt 124  Q
    |||||||| || || ||||||||| | || ||| |||| ||||| |||||||||||||||||||||||||||    
T  4038553 tttgaaactttataatatatattccagaaatatctggcgcccccgagaaataaactcaagatccgccactgt 4038624  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 15234720 - 15234660
Alignment:
Q  63 tttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactgtt 125  Q
    |||| |||||||||| ||| ||||||||||||||  |||| ||||||||||||||||| ||||    
T  15234720 tttaatatatattcttaaaatatttggcaccccc--gaaaaaaactcaagatccgccattgtt 15234660  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 14784689 - 14784628
Alignment:
Q  63 tttagtatatattctaaaactatttggcaccccc-aagaaataaactcaagatccgccactg 123  Q
    |||| ||||||||||  || |||||||||||||| || ||| ||||||||||||||||||||    
T  14784689 tttaatatatattcttcaaatatttggcacccccgaaaaaaaaaactcaagatccgccactg 14784628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 21267826 - 21267895
Alignment:
Q  54 ttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||  |||| ||||||||||| |   |||||||||||||||||| | || ||||||||||||||||    
T  21267826 ttgaaaccatttaatatatattctatagaaatttggcacccccaagaatttaattcaagatccgccactg 21267895  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 40954889 - 40954848
Alignment:
Q  85 tttggcacccccaagaaataaactcaagatccgccactgttt 126  Q
    |||||||||||||| || | ||||||||||||||||||||||    
T  40954889 tttggcacccccaacaatttaactcaagatccgccactgttt 40954848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 44629533 - 44629574
Alignment:
Q  85 tttggcacccccaagaaataaactcaagatccgccactgttt 126  Q
    |||||||||||| | |||| ||||||||||||||||||||||    
T  44629533 tttggcaccccctacaaatcaactcaagatccgccactgttt 44629574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 1075819 - 1075779
Alignment:
Q  83 tatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| | ||| ||||||||||||||||||||    
T  1075819 tatttggcacccccgaaaaaaaaactcaagatccgccactg 1075779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 17756862 - 17756934
Alignment:
Q  52 ttttgaaacgttttagtatatattctaaaactatttggcaccccc-aagaaataaactcaagatccgccactg 123  Q
    |||||||||  |||| ||||||||||  || ||||||||||| || || ||| ||||||||||||||||||||    
T  17756862 ttttgaaactgtttaatatatattcttcaaatatttggcacctccgaaaaaaaaaactcaagatccgccactg 17756934  T

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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 39864681 - 39864784
Alignment:
Q  22 accatcacaccagtttgcaatattg-at-taattttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgcc 119  Q
    ||||||||| |||||  |||||||| || |||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  39864681 accatcacagcagttcacaatattgtatataattttgaaactttttagtatatattctacaaatatttggcacccccgagaaataaactcaagatccgcc 39864780  T
Q  120 actg 123  Q
    ||||    
T  39864781 actg 39864784  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 16632180 - 16632108
Alignment:
Q  52 ttttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactgt 124  Q
    ||||||||| || |||||||||||||| || |||| |||||| || |||||||||||||||||||||||||||    
T  16632180 ttttgaaactttatagtatatattctacaaatattaggcacctccgagaaataaactcaagatccgccactgt 16632108  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 3712802 - 3712857
Alignment:
Q  68 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||  | |||||||||||||||| |||  |||||||||||||||||||    
T  3712802 tatatattctacgaatatttggcacccccaaaaaaataactcaagatccgccactg 3712857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 47476557 - 47476612
Alignment:
Q  68 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    ||||||||| | || |||||| ||||||||| ||| ||||||||||||||||||||    
T  47476557 tatatattccacaaatatttgacacccccaacaaaaaaactcaagatccgccactg 47476612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 25160525 - 25160455
Alignment:
Q  53 tttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    ||||||| |||||| ||||||||| | || ||||||||||||||  ||||| |  ||||||||||||||||    
T  25160525 tttgaaatgttttaatatatattccacaaatatttggcacccccgtgaaatgatatcaagatccgccactg 25160455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 50432564 - 50432637
Alignment:
Q  52 ttttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactgtt 125  Q
    |||||||||  |||| ||||||||| | |  |||||||||||||||| || | |||||||||||||| ||||||    
T  50432564 ttttgaaaccatttaatatatattccatatatatttggcacccccaacaatttaactcaagatccgcaactgtt 50432637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 25244869 - 25244925
Alignment:
Q  68 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactgt 124  Q
    ||||||||||| || |||||||||||||||| |||  || | |||||||||||||||    
T  25244869 tatatattctacaaatatttggcacccccaacaaaataagttaagatccgccactgt 25244925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 28702269 - 28702233
Alignment:
Q  85 tttggcacccccaagaaataaactcaagatccgccac 121  Q
    |||||||||||||| |||| |||||||||||||||||    
T  28702269 tttggcacccccaacaaattaactcaagatccgccac 28702233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 412299 - 412195
Alignment:
Q  20 gtaccatcacaccagtttgcaatattgattaatttt-gaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    |||||||| ||||| |||| |||||||  || |||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||     
T  412299 gtaccatcgcaccaatttgtaatattgtatattttttgaaacgttttagtatatattctaaaactatttgacactcccaaaaaataaactcaagatccgt 412200  T
Q  119 cactg 123  Q
    |||||    
T  412199 cactg 412195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 19922337 - 19922230
Alignment:
Q  20 gtaccatcacaccagtttgcaatattgattaatttt-gaaacgttttagtatatattctaaaactattt--ggcacccccaagaaataaactcaagatcc 116  Q
    |||||||||||||||||| |||| |||  || |||| ||||||||||||||||||||||| || |||||  ||||| |||||||||||||||||||||||    
T  19922337 gtaccatcacaccagtttacaattttgtatattttttgaaacgttttagtatatattctacaaatatttttggcactcccaagaaataaactcaagatcc 19922238  T
Q  117 gccactgt 124  Q
    ||||||||    
T  19922237 gccactgt 19922230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 39580694 - 39580590
Alignment:
Q  20 gtaccatcacaccagtttgcaatattgattaatttt-gaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    |||||||||||||||||| ||||||||  ||||||| ||||| ||||||||||||||||| || |||||||| ||| | | |||||||||||||||||||    
T  39580694 gtaccatcacaccagtttacaatattggataatttttgaaactttttagtatatattctacaaatatttggctccctcgacaaataaactcaagatccgc 39580595  T
Q  119 cactg 123  Q
    |||||    
T  39580594 cactg 39580590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 8643352 - 8643253
Alignment:
Q  26 tcacaccagtttgcaatattgattaat-tttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactgt 124  Q
    |||||||||||| ||||||||  || | |||||||||||||| ||||||||| | || ||||||||||| |||| |||| |  |||||||||||||||||    
T  8643352 tcacaccagtttacaatattgtatattgtttgaaacgttttaatatatattcgacaaatatttggcacctccaaaaaatgatatcaagatccgccactgt 8643253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 24888026 - 24887989
Alignment:
Q  85 tttggcacccccaagaaataaactcaagatccgccact 122  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  24888026 tttggcacccccaacaaattaactcaagatccgccact 24887989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 22910881 - 22910777
Alignment:
Q  20 gtaccatcacaccagtttgcaatattgattaatttt-gaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    ||||| |||||||| ||| ||||||||  || |||| ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  22910881 gtaccctcacaccaatttacaatattgtatattttttgaaactttttagtatatattctacaaatatttggcacccccgagaaataaactcaagatccgc 22910782  T
Q  119 cactg 123  Q
    |||||    
T  22910781 cactg 22910777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 22967641 - 22967745
Alignment:
Q  20 gtaccatcacaccagtttgcaatattgattaatttt-gaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    ||||| |||||||| ||| ||||||||  || |||| ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  22967641 gtaccctcacaccaatttacaatattgtatattttttgaaactttttagtatatattctacaaatatttggcacccccgagaaataaactcaagatccgc 22967740  T
Q  119 cactg 123  Q
    |||||    
T  22967741 cactg 22967745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 27993693 - 27993623
Alignment:
Q  53 tttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| ||||||||| | || |||||||||||||||| |||| |  ||||||||||||||||    
T  27993693 tttgaaacgttttaatatatattccacaaatatttggcacccccaaaaaatgatatcaagatccgccactg 27993623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 31835567 - 31835465
Alignment:
Q  22 accatcacaccagtttgcaatattg-attaattttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgcca 120  Q
    |||| ||||||||||| ||||| || ||||   ||||||||||||| ||||||||| | || |||||||||||||| |||||| |  |||||||||||||    
T  31835567 accaccacaccagtttacaataatgtattatgattgaaacgttttaatatatattccacaattatttggcacccccgagaaatgatatcaagatccgcca 31835468  T
Q  121 ctg 123  Q
    |||    
T  31835467 ctg 31835465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 42841797 - 42841700
Alignment:
Q  24 catcacaccagtttgcaatattgattaa-ttttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgcca 120  Q
    |||||||||||||| ||||||||  ||  |||| |||| ||||||||||||||||| || ||||||| |||||| | |||||||||||| ||| ||||    
T  42841797 catcacaccagtttacaatattgtatatctttttaaactttttagtatatattctacaaatatttggtacccccgaaaaataaactcaacatcagcca 42841700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 55406528 - 55406473
Alignment:
Q  68 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| ||||||||||||| || ||| ||  ||||||||||||||||    
T  55406528 tatatattctaaaaatatttggcaccccaaaaaaaaaagttcaagatccgccactg 55406473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 35187400 - 35187335
Alignment:
Q  55 tgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgcca 120  Q
    |||||||||||| ||||||||| | || |||||||||||||| ||||||    |||||||||||||    
T  35187400 tgaaacgttttaatatatattccataaatatttggcacccccgagaaatggtatcaagatccgcca 35187335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 50770056 - 50769955
Alignment:
Q  20 gtaccatcacaccagtttgcaatatt-gattaattttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    |||||||||||||||||| |||||||  ||   |||| |||||||||| ||||||||||| || |||||||||||||| | |||||||||||||||||||    
T  50770056 gtaccatcacaccagtttacaatattatatattttttaaaacgttttactatatattctacaaatatttggcacccccgataaataaactcaagatccgc 50769957  T
Q  119 ca 120  Q
    ||    
T  50769956 ca 50769955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 27813716 - 27813815
Alignment:
Q  24 catcacaccagtttgcaatattgattaa-ttttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccact 122  Q
    |||||||||||||| |||||||   ||  ||||||||| ||||||||||||||||| || |||||| ||| ||| | |||||||||||||||||||||||    
T  27813716 catcacaccagtttacaatattatatatcttttgaaactttttagtatatattctacaaatatttgacactcccgaaaaataaactcaagatccgccact 27813815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 47278118 - 47278050
Alignment:
Q  53 tttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccac 121  Q
    |||||||||||||| ||||||||| | || |||||||||||||| ||||||    ||||||||||||||    
T  47278118 tttgaaacgttttaatatatattccacaaatatttggcacccccgagaaatggtatcaagatccgccac 47278050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 2455953 - 2456008
Alignment:
Q  68 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| |||||||||||||||  ||| ||  ||||||||||||||||    
T  2455953 tatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactg 2456008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 47649035 - 47648996
Alignment:
Q  84 atttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  47649035 atttggcacccccaagaatttaactcaagatccgccactg 47648996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 43788897 - 43788859
Alignment:
Q  85 tttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  43788897 tttggcacccccaagaaatttactcaagatccgccactg 43788859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 19466193 - 19466133
Alignment:
Q  63 tttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||| |||||||||  ||| |||||||||||||||| ||| ||| ||||||||| ||||||    
T  19466193 tttaatatatattcataaaatatttggcacccccaataaaaaaattcaagatccaccactg 19466133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 25644900 - 25644940
Alignment:
Q  83 tatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| | ||| ||||||||||||||||||||    
T  25644900 tatttggcacccccgaaaaaaaaactcaagatccgccactg 25644940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 47100144 - 47100184
Alignment:
Q  83 tatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| | ||| ||||||||||||||||||||    
T  47100144 tatttggcacccccgaaaaaaaaactcaagatccgccactg 47100184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 26823101 - 26823202
Alignment:
Q  20 gtaccatcacaccagtttgcaatatt-gattaattttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgc 118  Q
    |||||||||||||||||| |||||||  ||   |||| |||||||||| ||||||||||| || |||||||||||||| | |||||||||||||||||||    
T  26823101 gtaccatcacaccagtttacaatattatatattttttaaaacgttttactatatattctacaaatatttggcacccccgataaataaactcaagatccgc 26823200  T
Q  119 ca 120  Q
    ||    
T  26823201 ca 26823202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 43822670 - 43822599
Alignment:
Q  52 ttttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    ||||||||||||||| ||||||||||| || ||||||  |||||| ||||||||||||||||||||||||||    
T  43822670 ttttgaaacgttttaatatatattctacaaatatttgcaacccccgagaaataaactcaagatccgccactg 43822599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 9615720 - 9615679
Alignment:
Q  85 tttggcacccccaagaaataaactcaagatccgccactgttt 126  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  9615720 tttggcacccccaagaatttaactcaagatccgccactgttt 9615679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 40934708 - 40934653
Alignment:
Q  68 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| |||||||||||||||  ||| ||  ||||||||||||||||    
T  40934708 tatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactg 40934653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 4580594 - 4580554
Alignment:
Q  83 tatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||||| || | |||||||||||||||||||    
T  4580594 tatttggcacccccaacaatttaactcaagatccgccactg 4580554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 13764901 - 13764941
Alignment:
Q  83 tatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| | ||| ||||||||||||||||||||    
T  13764901 tatttggcacccccgaaaaaaaaactcaagatccgccactg 13764941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 4442 - 4373
Alignment:
Q  54 ttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    ||||||||||||| ||||||||| | || |||||||||||||| |||||| |  ||||||||||||||||    
T  4442 ttgaaacgttttaatatatattccacaattatttggcacccccgagaaatgatatcaagatccgccactg 4373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 3912 - 3843
Alignment:
Q  54 ttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    ||||||||||||| ||||||||| | || |||||||||||||| |||||| |  ||||||||||||||||    
T  3912 ttgaaacgttttaatatatattccacaattatttggcacccccgagaaatgatatcaagatccgccactg 3843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 1049 - 1106
Alignment:
Q  39 caatattgattaattttgaaacgttttagtatatattctaaaactatttggcaccccc 96  Q
    ||||||||||||||||||||||  |||| ||||||||| | || |||||| |||||||    
T  1049 caatattgattaattttgaaactatttaatatatattccataattatttgacaccccc 1106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 64720 - 64793
Alignment:
Q  53 tttgaaacgttttagtatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactgttt 126  Q
    ||||||||  |||| |||||||||||    |||||||||||||||| |||   |||||||||||||||||||||    
T  64720 tttgaaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactgttt 64793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 181810 - 181850
Alignment:
Q  83 tatttggcacccccaagaaataaactcaagatccgccactg 123  Q
    |||||||||||||| | ||| ||||||||||||||||||||    
T  181810 tatttggcacccccgaaaaaaaaactcaagatccgccactg 181850  T

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