View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16027_low_3 (Length: 437)
Name: NF16027_low_3
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16027_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 41031294 - 41031699
Alignment:
| Q |
11 |
ataatactggtgtgacattatttctctagcagttgcaaccatagaagtttctgctattttattacctgtatgatgtatcacatgttcaagttctatgaca |
110 |
Q |
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| T |
41031294 |
ataatactggtgtgacattatttctctagcagttgcaaccatagaagtttctgctattttattacctgtatgatgtatcacatgttctagttctatgaca |
41031393 |
T |
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| Q |
111 |
agttttatcctgattttgtgtctcttttgttcattggtgacaaaagtggatttgaatgcattttgtatgactgattctagttaatagtgagttaaatgta |
210 |
Q |
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| T |
41031394 |
agttttatcctgattttgtgtctgttttgttcattggtgacaaaagtggatttgaatgcattttgtgtgactgattctagttaatagtgagttaaatgta |
41031493 |
T |
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| Q |
211 |
agtgatttatgtttggatgcattaattcatctaaaaattggtcgaacaataaattcaaggctaaaaatcaattgttgtttacaccatttgtatcagtttt |
310 |
Q |
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| T |
41031494 |
agtgatttatgtttggatgcattaattcatctaaaaattggtcaaacaataaatttaaggctaaaaatcaattgttgtttacaccatttgtatcagtttt |
41031593 |
T |
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| Q |
311 |
accggagaacatccaaaggcttgaattaatttatcaccggacttgttgatgaatcatgttggttgatttgatttgatttgatctgacaatgatatatcat |
410 |
Q |
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| T |
41031594 |
accggagaacatccaaaggcttgaatgaatttatcaccagacttgttgatgaatcatgttggttgatttgatttgatttgatctgacaatgatatatcat |
41031693 |
T |
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| Q |
411 |
gatcgc |
416 |
Q |
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| T |
41031694 |
gatcgc |
41031699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 41036882 - 41036958
Alignment:
| Q |
79 |
tatgatgtatcacatgttcaagttctatgacaagttttatcctgattttgtgtctcttttgttcattggtgacaaaa |
155 |
Q |
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| T |
41036882 |
tatgatatatcacatgttcatgttccttgacaagttttatcatgattttgtgtgtattttgttcttccgtgacaaaa |
41036958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 39981168 - 39981122
Alignment:
| Q |
182 |
tgattctagttaatagtgagttaaatgtaagtgatttatgtttggat |
228 |
Q |
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| T |
39981168 |
tgattttagttaaaagtgagttaaatggaagtggtttatgtttggat |
39981122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 283
Target Start/End: Complemental strand, 29923026 - 29922938
Alignment:
| Q |
196 |
agtgagttaaatgt-aagtgatttatgtttggatgcattaattcatctaaaaattggtcgaacaataaattcaaggctaaaaatcaatt |
283 |
Q |
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| T |
29923026 |
agtgagttgaatgtgaagtaatttatgtttggatacattcattcatgcaaaaatgagttaaaaaataaattcaaagataaaaatcaatt |
29922938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 4411334 - 4411306
Alignment:
| Q |
257 |
caataaattcaaggctaaaaatcaattgt |
285 |
Q |
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| T |
4411334 |
caataaattcaaggctaaaaatcaattgt |
4411306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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