View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16027_low_5 (Length: 387)
Name: NF16027_low_5
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16027_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 251017 - 251357
Alignment:
| Q |
18 |
aagttttagtttgaaactaatgcaatgctttgttgtcgttgaatgactataacctcattggataatagggggtttgagggctaaactggttttagctcag |
117 |
Q |
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| T |
251017 |
aagttttagtttgaaactaatgcaatgctttgttgtcgttgaatgactataacctcattggataatagggggtttgatggctaaactggttttagctcag |
251116 |
T |
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| Q |
118 |
agataaataaatagttggatgtcctaggtttaaaccaggaccgaccaatgagaaaaaactaatataacaactaaccactaacatttttcattnnnnnnnn |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
251117 |
agataaataaatagttggatgtcctaggtttaaaccaggacctaccaatgagagaaaactaatataacaactaaccactaacatttttcattaaaaaaaa |
251216 |
T |
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| Q |
218 |
nnnncacttcattggatatgttcaacaatgtctgcatgtttctgcaactttataacacaaaaccaagagaattaatagttaccccaatggtgggaatgag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251217 |
a----acttcattggatatgttcaacaatgtctgcatgtttctgcaactttataacacaaaaccaagagaattaatagttaccccaatggtgggaatgag |
251312 |
T |
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| Q |
318 |
gaaacaaaatgtgttgagttttactccaataattacaaataacaa |
362 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
251313 |
gaaacaaaatgtgttgagttttactcgaataattacaaataacaa |
251357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 17608156 - 17608201
Alignment:
| Q |
164 |
aatgagaaaaaactaatataacaactaaccactaacatttttcatt |
209 |
Q |
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| T |
17608156 |
aatgagaaaaaactaagatgacaattaactactaacatttttcatt |
17608201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 26281990 - 26282026
Alignment:
| Q |
167 |
gagaaaaaactaatataacaactaaccactaacattt |
203 |
Q |
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||||||||| |||| |||||||||||||||||||||| |
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| T |
26281990 |
gagaaaaaattaatctaacaactaaccactaacattt |
26282026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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