View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16027_low_9 (Length: 298)
Name: NF16027_low_9
Description: NF16027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16027_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 8163660 - 8163382
Alignment:
| Q |
1 |
acgtattaaaacaagtacgctataatttcaatatattggaacaagttggacaagtctgaaaaaatgttgctagtaatgttggattcaccaatttccatca |
100 |
Q |
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| T |
8163660 |
acgtattaaaacaagtgcgctagaatttcaatatatgggaacaagttgggcaagtctgaaaa--tgttgctagtaatgttggattcaccaatttccatca |
8163563 |
T |
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| Q |
101 |
aatactattgttgtgcatcgcaattgtcgcgacattgtgtggccgaattcaggagaaaactctggtcctgctccggaattgagtgagtaacttctaagct |
200 |
Q |
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| T |
8163562 |
aacactattgttgtgcatctcaattgtcgcgacattgtgtggctgaattcaggaaaaaactctggtcctgctccggaattgagtgagtaacttctaagct |
8163463 |
T |
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| Q |
201 |
aaactgcgtttcaaaaggacgcatctttgannnnnnncatcctatcttctgtctcttttgttgagctctttatataatttct |
282 |
Q |
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| T |
8163462 |
aaactgcgtttcaaaaggactcatctttga-ttttttcatcctaccttttgtctcttttgttgagctctttatataatttct |
8163382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 7316323 - 7316500
Alignment:
| Q |
40 |
aacaagttggacaagtctgaaaaaatgttgctagtaatgttggattcaccaatttccatcaaatactattgttgtgcatcgcaattgtcgcgacattgtg |
139 |
Q |
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| T |
7316323 |
aacaagttgggcaagtctgaaaaattgttgcttttaatgttggattcaccaatttccatccaatg---ttgttgtgcatcgcaattgtcgcgacattgtg |
7316419 |
T |
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| Q |
140 |
tggccgaattcaggagaaaactctggtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggac |
220 |
Q |
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| T |
7316420 |
tggctgaattcaggagaaaactctggtcctgctccggcagtgagtgagtagcttctaagctaaattttgtctcaaaaggac |
7316500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 40 - 282
Target Start/End: Complemental strand, 7219724 - 7219486
Alignment:
| Q |
40 |
aacaagttggacaagtctgaaaaaatgttgctagtaatgttggattcaccaatttccatcaaatactattgttgtgcatcgcaattgtcgcgacattgtg |
139 |
Q |
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|||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||||| | ||| | |||||||||||||||||||||||||||||| |
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| T |
7219724 |
aacaagttgggcaagtcagaaaaaatgttgctaataatgtaggattcaccaatttccaaccaatgat---gttgtgcatcgcaattgtcgcgacattgtg |
7219628 |
T |
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| Q |
140 |
tggccgaattcaggagaaaactctggtcctgctccggaattgagtgagtaacttctaagctaaactgcgtttcaaaaggacgcatctttgannnnnnnca |
239 |
Q |
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|||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| | || |||||||||| | ||||| | || |
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| T |
7219627 |
tggctgaattcaggagaaaactctggtcctgctccggcagtgagtgagtagcttctaagctaaattttgtctcaaaaggactcttcttt-aattttttca |
7219529 |
T |
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| Q |
240 |
tcctatcttctgtctcttttgttgagctctttatataatttct |
282 |
Q |
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||||| ||| ||| |||| ||||||||||||| ||||||||| |
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| T |
7219528 |
tcctaccttttgtatcttcagttgagctctttaaataatttct |
7219486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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