View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16028_low_1 (Length: 602)
Name: NF16028_low_1
Description: NF16028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16028_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 282 - 589
Target Start/End: Complemental strand, 1395939 - 1395632
Alignment:
| Q |
282 |
agtccagccttcactaaagcatttatcatcacattgagaccctcagcagctattaagaagaggaaaggagagagtgaatcaccttatctcatgcctcttt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1395939 |
agtccagccttcactaaagcatttatcatcacattgagatcctcagcagctattaagaagaggaaaggagagagtgaatcaccttatctcatgcctcttt |
1395840 |
T |
|
| Q |
382 |
caaatttgaattcgttagatcaaatcccttacttcatatatttaagtttaaaggcatcgagataagttgccatctatcatatcatatgatattatatcat |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1395839 |
caaatttgaattcgttagatcaaatcccttacttcatatatttaagtttaaaggcatcgagataagttgccatctatcatatcatatgatattatatcat |
1395740 |
T |
|
| Q |
482 |
atcataggagcaataattcacaaacaattgaaccaaatagtaatccatgactatcacctagaataagtcctaaacagagttacaaacagaatggactaca |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1395739 |
atcataggagcaataattcacaaacaattgaaccaaatagtaatccatgactatcacctagaataagtcctaaacagagttacaaacagaatggactaca |
1395640 |
T |
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| Q |
582 |
caatattt |
589 |
Q |
| |
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|||||||| |
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| T |
1395639 |
caatattt |
1395632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 1396246 - 1395965
Alignment:
| Q |
1 |
acgttcaagttacgtgagtctccaccaataagaatctccaagtaaacaaaaggtaaacgacccattttacaattcagaatggaggcagcctctatcaact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1396246 |
acgttcaagttacgtgagtctccaccaataagaatctccaagtaaacaaaaggtaaacgacccattttacaattcagaatgtaggcagcctctatcaact |
1396147 |
T |
|
| Q |
101 |
aagaatcaagaacgttgacacctactagcatactcttgtgaaaattaactttgagactcaagggcgcctcaagaaggtgaagcaaagcttttaaagctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1396146 |
aagaatcaagaacgttgacacctactagcatactcttgtgaaaattaactttgagactcaagggcgcctcaaaaaggtgaagcaaagcttttaaagctct |
1396047 |
T |
|
| Q |
201 |
aatattagcccaacttttaacaccaactaacaaagtattattagcaaattaaagatgagaaatagctagagacattatctta |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1396046 |
aatattagcccaacttttaacaccaactaacaaagtattatcagcaaattaaagatgagaaatagctagagacattatctta |
1395965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 23479485 - 23479445
Alignment:
| Q |
179 |
gaagcaaagcttttaaagctctaatattagcccaactttta |
219 |
Q |
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| T |
23479485 |
gaagcaaagcttttaaaactctaatattagccgaactttta |
23479445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 23479648 - 23479589
Alignment:
| Q |
16 |
gagtctccaccaataaga---atctccaagtaaacaaaaggtaaacgacccattttacaa |
72 |
Q |
| |
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|||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||| |
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| T |
23479648 |
gagtctccaccaataataggtatccccaagtaaaggaaaggtaaacgacccattttacaa |
23479589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 3544077 - 3544019
Alignment:
| Q |
204 |
attagcccaacttttaacaccaactaacaaagtattattagcaaattaaagatgagaaa |
262 |
Q |
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|||||||||||||||||| |||| ||||| ||||| || |||||||| |||||| |||| |
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| T |
3544077 |
attagcccaacttttaactccaagtaacagagtatcatcagcaaattgaagatgggaaa |
3544019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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