View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16028_low_4 (Length: 238)
Name: NF16028_low_4
Description: NF16028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16028_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 8070280 - 8070082
Alignment:
| Q |
20 |
ctggccttaaggaatctatataaaatgaaaaatacatgaatattcggataaggctctaaagcaaaggcttcattgaaaatagtaagatagactaaaaaca |
119 |
Q |
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| T |
8070280 |
ctggccttaaggaatctatataaaatgaaaaatacatgaatattcggataaggctctaaagcaaaggcttcattgaaaatagtatgatagactaaaaaca |
8070181 |
T |
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| Q |
120 |
caagaagagagagtaacctaagcatcatatgatagtcatcatgtttctcggggaggaggtcttccgatataagagcttgacggaactcttcaacagcttt |
219 |
Q |
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| T |
8070180 |
c---aagagagagtaacctaagcatcatatgatagtcatcatgtttctcagggaggaggtcttccgatataagagcttgacggaactcttcaacagcttt |
8070084 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 32618136 - 32618222
Alignment:
| Q |
135 |
acctaagcatcatatgatagtcatcatgtttctcggggaggaggtcttccgatataagagcttgacggaactcttcaacagctttca |
221 |
Q |
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| T |
32618136 |
acctgagcagcatatgatagtcatcatgcttctcaggaagcaattcatccaatataagagcctgacggaattcatcaacggctttca |
32618222 |
T |
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