View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16029_high_15 (Length: 293)
Name: NF16029_high_15
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 8914352 - 8914627
Alignment:
| Q |
1 |
acggaccaacaataataacttcaacactatccaaaaccagtctatttttctttaagccaaatcctatacttaagcatatttacttaccatatgcttatgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8914352 |
acggaccaacaataataacttcaacactatccaaaaccagtttatttttctttaagccaaatcctatacttaagcatatttacttaccatatgcttatgc |
8914451 |
T |
|
| Q |
101 |
ttttgttgagggttactttctcttgaatccacttagcgatattttttctctttctatcattcttaatagcagtgttagattccatatagattaggtctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8914452 |
ttttgttgagggttactttctcttgaatccactttgcgatattttttctctttctatcattcttaatagcagtgttagattccatatagattaggtctcc |
8914551 |
T |
|
| Q |
201 |
ctaattttatattttgttgaatttgtttaggaatgcaccatctttttgttttctttatttcttatcaaatgatatt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8914552 |
ctaattttatattttgttgaatttgtttagggttgcaccatctttttgttttctttatttcttatcaaatgatatt |
8914627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University