View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_high_17 (Length: 282)
Name: NF16029_high_17
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 8556806 - 8556530
Alignment:
| Q |
5 |
tatggctactacacaacttgaaacaaaagaaacaaaaatagtagatgagaaagtaagttacctgaacataaaggacgctttgaggttgaagaccagtatt |
104 |
Q |
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| T |
8556806 |
tatggctactaagcaacttgaaacaaaagaaacaaaaatagtagatgagaaagtaagttacctgaacataaaggacgctttgaggttgaagaccagtatt |
8556707 |
T |
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| Q |
105 |
atggaagtaaaagtagtgattaacacctcttttgaaaggagtgctataacgaggatgatcaaacacctttttgattgtttcaccaagtttggttctacaa |
204 |
Q |
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| T |
8556706 |
gtggaagtaaaagtagtgattaacacctcttttgaaaggagtggtataacgaggatgatcaaacacctttttgattgtttcaccaagtttggttctacaa |
8556607 |
T |
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| Q |
205 |
tcacatgtcttcagcactgcatcagtcaacacaacccgtttctgtacaaagtctttgacttcttcagcagcaggatt |
281 |
Q |
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| T |
8556606 |
tcacatgtcttcagcactgaatcagtcaaaacaacctgtttctgtacaaagtctttgacttcttcagcatcaggatt |
8556530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 269
Target Start/End: Complemental strand, 8552397 - 8552208
Alignment:
| Q |
66 |
ctgaacataaaggacgctttgaggttgaagaccagtattatggaagtaaaagtagtgattaacacctcttttgaaaggagtgctataacgaggatgatca |
165 |
Q |
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| T |
8552397 |
ctgaacataaaggacactttgaggttgaagaccagtatta--------------gtgattagcacctcttttgaaaggagcggtataacgaggatgatca |
8552312 |
T |
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| Q |
166 |
aacacctttttgattgtttcaccaagtttggttctacaatcacatgtcttcagcactgcatcagtcaacacaacccgtttctgtacaaagtctttgactt |
265 |
Q |
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| T |
8552311 |
aacaactttttgatagtttcaccaagtttggctctacaatcacatgtcttcaatactgaatctgtcaacacaacctgtttttgcacgaactctttgactt |
8552212 |
T |
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