View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_high_20 (Length: 269)
Name: NF16029_high_20
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 19559746 - 19559532
Alignment:
| Q |
1 |
cactcactttaataagacttttgtaaaaatatctaatttagtgctccctctgttcttttgtaagtgccattttattgaaaatatgttgttgttttcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19559746 |
cactcactttaataagacttttgtaaaaatatctaatttagtgctccctctgttcttttgtaagtgccattttattgaaaatatgt---tgttttcaaat |
19559650 |
T |
|
| Q |
101 |
tttaatgtagattatttttggaaagaaaaatttgaagtagtattaatctttgctttggtnnnnnnnttccgaactatgtattgacttataaatattcata |
200 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||||| | ||||| ||||| |
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| T |
19559649 |
tttaatgtatattatttttggaaagaaaattttgaagtagtattaatcgttgctttggtaaaaaaattcccgactatgtattgactgacaaatactcata |
19559550 |
T |
|
| Q |
201 |
agttctgactattaattg |
218 |
Q |
| |
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||||| |||||||||||| |
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| T |
19559549 |
agttccgactattaattg |
19559532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19553387 - 19553171
Alignment:
| Q |
1 |
cactcactttaataagacttttgtaaaaatatctaatttagtgctccctctgttcttttgtaagtgccattttattgaaaatatgttgttgttttcaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19553387 |
cactcactttaataagacttttgtaaaaatatctaatttagtgctccctctgctcttttgtaagtgccattttattgaaaatatgt---tgttttcaaat |
19553291 |
T |
|
| Q |
101 |
tttaatgtagattatttttggaaagaaaaatttgaagtagtattaatctttgctttggtnnnnnnnttccgaactatgtattgacttataaatattcata |
200 |
Q |
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||||||||| ||||||||||||||||||| ||||||| |||||||| |||||| ||| |||| |||||||||||||||||| ||| ||||| |
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| T |
19553290 |
tttaatgtatattatttttggaaagaaaattttgaagctgtattaattgttgcttgggtaaaaaaattcccgactatgtattgacttatatatactcata |
19553191 |
T |
|
| Q |
201 |
agttctgactattaattgtt |
220 |
Q |
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||||| |||||||||||||| |
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| T |
19553190 |
agttccgactattaattgtt |
19553171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 19537063 - 19536910
Alignment:
| Q |
4 |
tcactttaataagacttttgtaaaaatatctaatttagtgctccctctgttcttttgtaagtgccattttattgaaaatatgttgttgttttcaaatttt |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
19537063 |
tcactttaataagactttcgtaaaaatatctaatttagtgctccctctgtt-ttttataagtgccattttattgaaaata---tgttgttttcatatttt |
19536968 |
T |
|
| Q |
104 |
aatgtaga--ttatttttggaaagaaaaatttgaagtagtattaatctttgctttggt |
159 |
Q |
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|||||||| || ||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
19536967 |
aatgtagattttttttttggaaagaaaattttgaagtagtattaattgttgctttggt |
19536910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 18481987 - 18482201
Alignment:
| Q |
1 |
cactcactttaataagacttttgtaaaaatatctaatttagtgctccctctgttcttttgtaagtgccattttattgaaaatatgttgttgttttcaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
18481987 |
cactcactttaataagacttttgtaaaaatatctaatttagtgctccctccattcttttgtaagtgccattttatttaaaat---ttgttgttttcaaat |
18482083 |
T |
|
| Q |
101 |
tttaatgtagattatttttggaaagaaaaatttgaagtagtattaatctttgctttggtnnnnnnnttccgaactatgtattgacttataaatattcata |
200 |
Q |
| |
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|||||||| | ||||||| | || ||| ||||||||||||| || ||||||| |||| |||||||||| ||||||||||| ||||| |
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| T |
18482084 |
tttaatgt--aatattttttggaattttttttttaagtagtattaattgtttctttggtaaaaaacttcccgactatgtattaacttataaatactcata |
18482181 |
T |
|
| Q |
201 |
agttctgactattaattgtt |
220 |
Q |
| |
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||||| |||||||||||||| |
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| T |
18482182 |
agttccgactattaattgtt |
18482201 |
T |
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