View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_high_24 (Length: 226)
Name: NF16029_high_24
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 19559961 - 19559832
Alignment:
| Q |
11 |
gaattgggtgctggatttaataaagattaagtttcattgaagannnnnnnnnattttcttg-ttgaaaggagttttgttgaaaatgaatattcttgattt |
109 |
Q |
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| T |
19559961 |
gaattgggtgctggatttaataaagattgagtttcattgaagtttttt-----ttttctttcttgaaaggagttttgttgaaaatgaacattcttgattt |
19559867 |
T |
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| Q |
110 |
ctatatttttgttaatggaggtataacaaatagtc |
144 |
Q |
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| T |
19559866 |
ctatattttagttaatggaggtataacaaatagtc |
19559832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 19553610 - 19553478
Alignment:
| Q |
8 |
gaagaattgggtgctggatttaataaagattaagtttcattgaagannnnnnnnnattttcttgttgaaaggagttttgttgaaaatgaatattcttgat |
107 |
Q |
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| T |
19553610 |
gaagaattgggtgctggatttaataaagattgagtttcattgaa----atttttttttttttttttgaaaggagttttgttgaaaatgaacattcttgat |
19553515 |
T |
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| Q |
108 |
ttctatatttttgttaatggaggtataacaaatagtc |
144 |
Q |
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| T |
19553514 |
ttctatattttagttaatagaggtattacaaatagtc |
19553478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 19537295 - 19537160
Alignment:
| Q |
8 |
gaagaattgggtgctggatttaataaagattaagtttcattgaagannnnnnnnnattttcttgttgaaaggagttttgttgaaaatgaatattcttgat |
107 |
Q |
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| T |
19537295 |
gaagaattgggtgttggatttaataaagattgagtttcattgaatattttattttttatt-ttcttgaaaggagttttgttgaaaacgaacattcttgat |
19537197 |
T |
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| Q |
108 |
ttctatatttttgttaatggaggtataacaaatagtc |
144 |
Q |
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| T |
19537196 |
ttctacattttagttaatggaggtataataaatagtc |
19537160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 18481839 - 18481912
Alignment:
| Q |
75 |
aaaggagttttgttgaaaatgaatattcttgatttctatatttttgttaat----ggaggtataacaaatagtc |
144 |
Q |
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| T |
18481839 |
aaaggagttttgttgaaaatgaacattcttaatttctagatttttgttaatggagggaggtataacaaatagtc |
18481912 |
T |
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