View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_high_3 (Length: 533)
Name: NF16029_high_3
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 6 - 518
Target Start/End: Complemental strand, 36739195 - 36738683
Alignment:
| Q |
6 |
agatgaagattctgatgaaactgtgaagaaggtaatggtacatttgttatcaaggtgttattttatgttttaatcgttatggtgatttgagacaatttgt |
105 |
Q |
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| T |
36739195 |
agatgaagattatgatgaaactgtgaagacggtaatggtacatttgctatcaaggtgttattttatgttttaattgttatggtgatttgatacaatttgt |
36739096 |
T |
|
| Q |
106 |
cttttacttttgaaggttgacaagggaaagaaaaggtccaatgaatctgcttcagaaactccagtttctttcatgaagacgaaaaa-tgccactcctgag |
204 |
Q |
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| T |
36739095 |
cttttacttttgaaggttgacaagggaaagaaaaggtccaattaatctgcttcaaaaactccagtttctttcatgaagacgaaaaaatgccactcctgag |
36738996 |
T |
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| Q |
205 |
aaaactggtgagaccaagttgtattatgtattgtaataaatatatattgtttctgttttcatttttgtctaattaaaaaagtatctgtttttctgcttgt |
304 |
Q |
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| T |
36738995 |
aaaactggtgagaccaagttgtattatgtattgtaataaatatatattgtttctgttttcatttt-gtctaattgaaaaagtatttgtttttctacttgt |
36738897 |
T |
|
| Q |
305 |
tgattcagcgttaaatccatttgccaagttcttacgttattgtgttgttgatagatcatggattgatgtttgtgtttgtatgccgtattgtttatatctt |
404 |
Q |
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| T |
36738896 |
tgattcagcgttaaatccatttgccaagttcttacgttattgtgttgttgatagatcatggattaatgtttgtgtttgtatgccgtattgtttatatctt |
36738797 |
T |
|
| Q |
405 |
tctattatacatcagttaactgttcttaaattgtagtattgtttgaacgatgcatgtcaattctgaagttgtagttggttggattcatgcttgcatttgc |
504 |
Q |
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| T |
36738796 |
tctactatacatcagttaaatgttcttaagttgtagtattgtttgaacgatgcatgtcaattctgaagttgtagttggttggattcatgcttgcatttgc |
36738697 |
T |
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| Q |
505 |
atgttgtgttgttt |
518 |
Q |
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| T |
36738696 |
atgttgtgttgttt |
36738683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 83 - 479
Target Start/End: Original strand, 35981003 - 35981390
Alignment:
| Q |
83 |
tatggtgatttgagacaat-ttgtcttttacttttgaaggttgacaagggaaagaaaaggtccaatgaatctgcttcagaaactccagtttctttcatga |
181 |
Q |
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| T |
35981003 |
tatggtgatttgggataatcttgtctttttgttttgaaggttgaccagggaaagaagaggcccaatgaatctgcttcaaaaactccaatttctagcaaga |
35981102 |
T |
|
| Q |
182 |
agacgaaaaatgccactcctgagaaaactggtgagaccaagttgtattatgtattgtaataaatatatattgtttctgttttcatttttgtctaattaaa |
281 |
Q |
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| T |
35981103 |
aatcaaaaaatgccactcctgagaagactggtaagaccaagttgtattatgttttgcaataaatatatattgtttctgttttcatttttgtataattgga |
35981202 |
T |
|
| Q |
282 |
aaagtatctg----tttttctgcttgttgattcagcgttaaatccatttgccaagttctta-cgttattgtgttgttgatagatcatggattgatgtttg |
376 |
Q |
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| T |
35981203 |
caagtatttgtttttttttttgcttgtcgattcagtgttggatccattctataagttcttatatttattgtgttg---------------ttgatgcttg |
35981287 |
T |
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| Q |
377 |
tgtttgtatgccgtattgtttatatctttctattatacatcagttaactgttcttaaattgtagtattgtttgaacgatgcatgtcaattctgaagttgt |
476 |
Q |
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| T |
35981288 |
cgtttgtatgctgcattgtttatatctttctactatacatcagttgactgttcttaaattgtagtattgtttgaatgatgcatgtcaatgctgaaattgt |
35981387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 28943149 - 28943016
Alignment:
| Q |
113 |
ttttgaaggttgacaagggaaagaaaaggtccaatgaatctgcttcagaaactccagtttctttcatgaagacgaaaaatgccactcctgagaaaactgg |
212 |
Q |
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|||||||||| ||| |||||||||| ||| ||||||||||||||||| |||||||||||||| | ||| || |||||||||||||||||||||||||| |
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| T |
28943149 |
ttttgaaggtggaccagggaaagaagaggcccaatgaatctgcttcaaaaactccagtttct---aagaaaacaaaaaatgccactcctgagaaaactgg |
28943053 |
T |
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| Q |
213 |
tgagaccaagttgtattatgtattgtaataaatatat |
249 |
Q |
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| T |
28943052 |
tgagaccaagttgtattatatattgtaataaatatat |
28943016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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