View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_high_4 (Length: 502)
Name: NF16029_high_4
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 8556805 - 8556316
Alignment:
| Q |
1 |
atggctactacacaacttgaaacaaaagaaacaaaaatagtagatgagaaagtaagttacctgaacataaaggacgctttgaggttgaagaccagtatta |
100 |
Q |
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| T |
8556805 |
atggctactaagcaacttgaaacaaaagaaacaaaaatagtagatgagaaagtaagttacctgaacataaaggacgctttgaggttgaagaccagtattg |
8556706 |
T |
|
| Q |
101 |
tggaagtaaaagtagtgattaacacctcttttgaaaggagtgctataacgaggatgatcaaacacctttttgattgtttcaccaagtttggttctacaat |
200 |
Q |
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| T |
8556705 |
tggaagtaaaagtagtgattaacacctcttttgaaaggagtggtataacgaggatgatcaaacacctttttgattgtttcaccaagtttggttctacaat |
8556606 |
T |
|
| Q |
201 |
cacatgtcttcagcactgcatcagtcaacacaacccgtttctgtacaaagtctttgacttcttcagcagcaggattgtcaagccaacggtaagggtcggg |
300 |
Q |
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| T |
8556605 |
cacatgtcttcagcactgaatcagtcaaaacaacctgtttctgtacaaagtctttgacttcttcagcatcaggattttcaagccaacggtaagggtcggg |
8556506 |
T |
|
| Q |
301 |
aacattaacgccgtgatagttgtcaatgacggagtcgtttctgcgagcaatgggatattggatggtttcatcaaacacagaaagtgaacccatttttctt |
400 |
Q |
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| T |
8556505 |
aacattaacgccgtgatagttgtcaatgacggagtcgtttctgcgagcaatgggatattggatggtttcatcaaacacagaaagtgaacccatttttctt |
8556406 |
T |
|
| Q |
401 |
ctatagctgttattgttaagagaagaagagtaatgagatttgaataatgtgttggtggtaaataaacgaggaagaaagtttgggtatctg |
490 |
Q |
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| T |
8556405 |
ctatagctgttattgttaagagaagaagagtaatgagatttgaataatgtgttggtggtaaataaacgaggaagaaagtttgggtatctg |
8556316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 61 - 284
Target Start/End: Complemental strand, 8552397 - 8552188
Alignment:
| Q |
61 |
ctgaacataaaggacgctttgaggttgaagaccagtattatggaagtaaaagtagtgattaacacctcttttgaaaggagtgctataacgaggatgatca |
160 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||||||||||| |
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| T |
8552397 |
ctgaacataaaggacactttgaggttgaagaccagtatta--------------gtgattagcacctcttttgaaaggagcggtataacgaggatgatca |
8552312 |
T |
|
| Q |
161 |
aacacctttttgattgtttcaccaagtttggttctacaatcacatgtcttcagcactgcatcagtcaacacaacccgtttctgtacaaagtctttgactt |
260 |
Q |
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| T |
8552311 |
aacaactttttgatagtttcaccaagtttggctctacaatcacatgtcttcaatactgaatctgtcaacacaacctgtttttgcacgaactctttgactt |
8552212 |
T |
|
| Q |
261 |
cttcagcagcaggattgtcaagcc |
284 |
Q |
| |
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|||| || ||||||| ||||||| |
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| T |
8552211 |
cttctgcgtcaggattttcaagcc |
8552188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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