View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16029_high_5 (Length: 501)

Name: NF16029_high_5
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16029_high_5
NF16029_high_5
[»] chr4 (19 HSPs)
chr4 (17-152)||(37773943-37774081)
chr4 (400-489)||(37773758-37773847)
chr4 (425-488)||(33227119-33227182)
chr4 (424-488)||(12494659-12494723)
chr4 (424-488)||(33191157-33191221)
chr4 (424-483)||(27450487-27450546)
chr4 (169-207)||(37773886-37773924)
chr4 (424-488)||(436138-436202)
chr4 (424-488)||(31960123-31960187)
chr4 (424-488)||(48622850-48622914)
chr4 (424-488)||(50286880-50286944)
chr4 (424-483)||(53707703-53707762)
chr4 (424-482)||(1211705-1211763)
chr4 (440-482)||(47265517-47265559)
chr4 (440-488)||(1777324-1777372)
chr4 (424-488)||(4440764-4440828)
chr4 (424-488)||(23906610-23906674)
chr4 (424-488)||(31458937-31459001)
chr4 (424-488)||(43433827-43433891)
[»] chr8 (5 HSPs)
chr8 (425-489)||(12492150-12492214)
chr8 (424-489)||(39946766-39946831)
chr8 (424-488)||(36545056-36545120)
chr8 (424-488)||(18752182-18752246)
chr8 (424-488)||(36565550-36565614)
[»] chr2 (11 HSPs)
chr2 (424-488)||(3865981-3866045)
chr2 (424-488)||(36183360-36183424)
chr2 (424-489)||(4807501-4807566)
chr2 (424-488)||(8180689-8180753)
chr2 (424-488)||(38429793-38429857)
chr2 (424-488)||(41197537-41197601)
chr2 (424-482)||(11992421-11992479)
chr2 (440-481)||(23997542-23997583)
chr2 (424-488)||(451931-451995)
chr2 (424-488)||(41763350-41763414)
chr2 (440-488)||(45367933-45367981)
[»] chr1 (10 HSPs)
chr1 (424-488)||(32231263-32231327)
chr1 (427-488)||(34792658-34792719)
chr1 (424-489)||(43240689-43240754)
chr1 (424-488)||(9592643-9592707)
chr1 (424-488)||(30202439-30202503)
chr1 (424-482)||(51601967-51602025)
chr1 (424-488)||(696178-696242)
chr1 (424-488)||(1210654-1210718)
chr1 (424-488)||(8671829-8671893)
chr1 (424-488)||(49347702-49347766)
[»] chr3 (7 HSPs)
chr3 (424-482)||(25191288-25191346)
chr3 (424-488)||(52138709-52138773)
chr3 (424-482)||(38850003-38850061)
chr3 (440-488)||(21998-22046)
chr3 (424-488)||(33272337-33272401)
chr3 (424-470)||(45728055-45728101)
chr3 (426-488)||(51448018-51448080)
[»] chr6 (3 HSPs)
chr6 (424-489)||(35043749-35043814)
chr6 (424-488)||(28085285-28085349)
chr6 (424-488)||(9706685-9706749)
[»] chr7 (15 HSPs)
chr7 (424-488)||(34869329-34869393)
chr7 (424-488)||(38606914-38606978)
chr7 (426-488)||(33072865-33072927)
chr7 (424-488)||(31005132-31005196)
chr7 (424-488)||(32630504-32630568)
chr7 (424-488)||(33350115-33350179)
chr7 (424-488)||(35906510-35906574)
chr7 (424-488)||(49029185-49029249)
chr7 (424-482)||(11593869-11593927)
chr7 (426-488)||(44855481-44855543)
chr7 (427-488)||(37617856-37617917)
chr7 (424-488)||(12841584-12841648)
chr7 (424-488)||(36651903-36651967)
chr7 (424-488)||(36869598-36869662)
chr7 (440-488)||(45836789-45836837)
[»] chr5 (5 HSPs)
chr5 (424-488)||(1287898-1287962)
chr5 (424-488)||(24178419-24178483)
chr5 (424-477)||(10639206-10639259)
chr5 (424-488)||(2075783-2075847)
chr5 (424-488)||(3301753-3301817)
[»] scaffold0045 (1 HSPs)
scaffold0045 (424-470)||(86934-86980)
[»] scaffold0036 (1 HSPs)
scaffold0036 (436-489)||(4580-4633)
[»] scaffold0157 (1 HSPs)
scaffold0157 (424-488)||(25754-25818)
[»] scaffold0113 (1 HSPs)
scaffold0113 (424-488)||(11907-11971)


Alignment Details
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 37774081 - 37773943
Alignment:
Q  17 cacttatgtttcatgttcagctctcttgtaatatttatcatttctannnnnnn---aagtgataaggatattttagacatttaaaatttgttaaaattgc 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||    
T  37774081 cacttatgtttcatgttgagctctcttgtaatatttatcatttctattgtttttttaagtgataaggatattttagacatttaaaatttgttaaaattgc 37773982  T
Q  114 taacattagttaaaccaatccttaaactttactacattg 152  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37773981 taacattagttaaaccaatccttaaactttactacattg 37773943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 37773847 - 37773758
Alignment:
Q  400 taccacaatcaaatcctaagtcctagtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtattat 489  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||  ||||||||||| ||||||||||||| |||||||||||| |||||    
T  37773847 taccacaatcaaatcctaagttctagtaagtgtaggagagatgagaatgttgcgctggatgagtggtaagactagacatgatagaattat 37773758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 488
Target Start/End: Original strand, 33227119 - 33227182
Alignment:
Q  425 gtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||| ||| |||| |||||||||||| ||||||||||||| |||||||||||| ||||    
T  33227119 gtaagtgtagcagagatgaggatgttgcgctggatgagtggtaagactagacatgataggatta 33227182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 12494659 - 12494723
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  12494659 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggatta 12494723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 33191221 - 33191157
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| |||||||||||| |||||||||||||||||| | ||||| ||||    
T  33191221 agtaagtgtagcagagatgaggatgttgcgctggatgagtggtaagattagataggataggatta 33191157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 483
Target Start/End: Complemental strand, 27450546 - 27450487
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatag 483  Q
    |||||||||||  || |||| |||||||||||| ||||||||||||| ||||||||||||    
T  27450546 agtaagtgtagcggagatgaggatgttgcgctggatgagtggtaagactagacatgatag 27450487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 37773924 - 37773886
Alignment:
Q  169 tccttacactatactacaaattggcaaataattttttaa 207  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  37773924 tccttaaactatactacaaattggcaaataattttttaa 37773886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 436138 - 436202
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || |||||| |||||| |||||||||||| ||||    
T  436138 agtaagtgtagcagagatgaggatgttgcgttggatgagtcgtaagactagacatgataggatta 436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 31960187 - 31960123
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||| ||||| ||||    
T  31960187 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggatta 31960123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 48622914 - 48622850
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||  || ||||||||||||| |||||||||||| ||||    
T  48622914 agtaagtgtagcagagatgaggatgttgctttggatgagtggtaagactagacatgataggatta 48622850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 50286880 - 50286944
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| || |||||| || ||||||||||||| |||||||||||| ||||    
T  50286880 agtaagtgtagcagagatgaggaagttgcgttggatgagtggtaagactagacatgataggatta 50286944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 483
Target Start/End: Original strand, 53707703 - 53707762
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatag 483  Q
    ||||||||||| ||| |||| ||||||||| || |||||| |||||| ||||||||||||    
T  53707703 agtaagtgtagcagagatgaggatgttgcgttggatgagtagtaagactagacatgatag 53707762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 482
Target Start/End: Complemental strand, 1211763 - 1211705
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgata 482  Q
    |||||||||||  ||||||| |||||||| ||| ||||||||||| | |||||||||||    
T  1211763 agtaagtgtagcggatatgaggatgttgcactggatgagtggtaaaactagacatgata 1211705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 440 - 482
Target Start/End: Complemental strand, 47265559 - 47265517
Alignment:
Q  440 atgatgatgttgcgctgaatgagtggtaagattagacatgata 482  Q
    |||| |||||||||||| ||||||||||||| |||||||||||    
T  47265559 atgaggatgttgcgctggatgagtggtaagactagacatgata 47265517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 1777372 - 1777324
Alignment:
Q  440 atgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  1777372 atgaggatgttgcgttggatgagtggtaagactagacatgataggatta 1777324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 4440764 - 4440828
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| || | ||||||||| |  ||||||||||||| |||||||||||| ||||    
T  4440764 agtaagtgtagcagagattaggatgttgcgttcgatgagtggtaagactagacatgataggatta 4440828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 23906674 - 23906610
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || |||||||| |||| |||||| ||||| ||||    
T  23906674 agtaagtgtagcagagatgaggatgttgcgttggatgagtggcaagactagacaagataggatta 23906610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 31458937 - 31459001
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| | | |||| ||||||||| ||  |||||||||||| |||||||||||| ||||    
T  31458937 agtaagtgtagcacagatgaggatgttgcgttggttgagtggtaagactagacatgataggatta 31459001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 43433827 - 43433891
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || |||||||| |||| |||||| ||||| ||||    
T  43433827 agtaagtgtagcagagatgaggatgttgcgttggatgagtggcaagactagacaagataggatta 43433891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 425 - 489
Target Start/End: Complemental strand, 12492214 - 12492150
Alignment:
Q  425 gtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtattat 489  Q
    |||||||||| |||||||| ||||||||| || ||||||||||||| |||||||||||| |||||    
T  12492214 gtaagtgtagcagatatgaggatgttgcgttggatgagtggtaagactagacatgataggattat 12492150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 39946766 - 39946831
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtattat 489  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| |||||    
T  39946766 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattat 39946831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 36545056 - 36545120
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||| | || ||||||||||||| |||||||||||| ||||    
T  36545056 agtaagtgtagcagagatgaggatgttgtgttggatgagtggtaagactagacatgataggatta 36545120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 18752246 - 18752182
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||||  || ||||  ||||||||||||||||||| ||||| ||||||| |||| ||||    
T  18752246 agtaagtgtagcggagatgagaatgttgcgctgaatgagtgttaagactagacataataggatta 18752182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 36565614 - 36565550
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| |||| |||| || ||||||||||||| |||||| ||||| ||||    
T  36565614 agtaagtgtagcagagatgaggatgatgcgttggatgagtggtaagactagacaggataggatta 36565550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 3865981 - 3866045
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||||||||||||| || ||||||||||||| |||||||||||| ||||    
T  3865981 agtaagtgtagcagagatgatgatgttgcgttggatgagtggtaagactagacatgataggatta 3866045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 36183360 - 36183424
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  36183360 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggatta 36183424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 4807501 - 4807566
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtattat 489  Q
    ||||||||||| ||| |||| ||||||||| || |||| |||||||| |||||||||||| |||||    
T  4807501 agtaagtgtagcagagatgaggatgttgcgttggatgaatggtaagaatagacatgataggattat 4807566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 8180689 - 8180753
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||| | || ||||||||||||| |||||||||||| ||||    
T  8180689 agtaagtgtagcagagatgaggatgttgtgttggatgagtggtaagactagacatgataggatta 8180753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 38429793 - 38429857
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||||  || |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  38429793 agtaagtgtagcggagatgaggatgttgcgttggatgagtggtaagactagacatgataggatta 38429857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 41197601 - 41197537
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||||  || |||| |||||||||||  ||||||||||||| |||||||||||| ||||    
T  41197601 agtaagtgtagcggagatgaggatgttgcgctagatgagtggtaagactagacatgataggatta 41197537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 482
Target Start/End: Complemental strand, 11992479 - 11992421
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgata 482  Q
    |||||||||||  || |||| |||||||||||| ||||||||||| | |||||||||||    
T  11992479 agtaagtgtagcggagatgaggatgttgcgctggatgagtggtaatactagacatgata 11992421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 481
Target Start/End: Original strand, 23997542 - 23997583
Alignment:
Q  440 atgatgatgttgcgctgaatgagtggtaagattagacatgat 481  Q
    |||| |||||||||||| ||||||||||||| ||||||||||    
T  23997542 atgaagatgttgcgctggatgagtggtaagactagacatgat 23997583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 451995 - 451931
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| ||||  |||||||| |  ||||||||||||| |||||||||||| ||||    
T  451995 agtaagtgtagcagagatgagtatgttgcgttagatgagtggtaagactagacatgataggatta 451931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 41763414 - 41763350
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||||  || |||| ||||||||| || ||||||||||||| |||||| ||||| ||||    
T  41763414 agtaagtgtagcggagatgaggatgttgcgatggatgagtggtaagactagacaagataggatta 41763350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 45367981 - 45367933
Alignment:
Q  440 atgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||||||||| |||| |||||||| |||||| ||||| ||||    
T  45367981 atgatgatgttgcgctggatgaatggtaagactagacaagataggatta 45367933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 32231327 - 32231263
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| |||||||||||  |||||||||||||||||||||||||| ||||    
T  32231327 agtaagtgtagtagagatgaggatgttgcgctagatgagtggtaagattagacatgataggatta 32231263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 488
Target Start/End: Complemental strand, 34792719 - 34792658
Alignment:
Q  427 aagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||| ||| |||| |||||||||||| ||||||||||||| |||||||||||| ||||    
T  34792719 aagtgtagcagagatgaggatgttgcgctggatgagtggtaagactagacatgataggatta 34792658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 489
Target Start/End: Complemental strand, 43240754 - 43240689
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtattat 489  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| |||||    
T  43240754 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggattat 43240689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 9592643 - 9592707
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  9592643 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggatta 9592707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 30202503 - 30202439
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  30202503 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggatta 30202439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 51601967 - 51602025
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgata 482  Q
    ||||||||||| |||||||| ||||||||| |  ||||||||||||| |||||||||||    
T  51601967 agtaagtgtagtagatatgaggatgttgcgttagatgagtggtaagactagacatgata 51602025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 696178 - 696242
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||||  || |||| |||||||||||| ||||||||||||| |||||| ||||| ||||    
T  696178 agtaagtgtagcggagatgaggatgttgcgctggatgagtggtaagactagacaggataggatta 696242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 1210654 - 1210718
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||| ||||| ||||    
T  1210654 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggatta 1210718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 8671829 - 8671893
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| || | ||||||||| || ||||||||||||| |||||||||||| ||||    
T  8671829 agtaagtgtagcagagataaggatgttgcgttggatgagtggtaagactagacatgataggatta 8671893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 49347766 - 49347702
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| | | |||| ||||||||| || ||||||||||||| |||||| ||||| ||||    
T  49347766 agtaagtgtagcaaagatgaggatgttgcgttggatgagtggtaagactagacaggataggatta 49347702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 25191288 - 25191346
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgata 482  Q
    ||||||||||| ||| |||| |||||||||||| ||||||||||||| |||||||||||    
T  25191288 agtaagtgtagcagagatgaggatgttgcgctggatgagtggtaagactagacatgata 25191346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 52138709 - 52138773
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  52138709 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggatta 52138773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 38850003 - 38850061
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgata 482  Q
    ||||||||||| ||| |||| |||||||||||| |||||| |||||| |||||||||||    
T  38850003 agtaagtgtagcagagatgaggatgttgcgctggatgagtagtaagactagacatgata 38850061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 21998 - 22046
Alignment:
Q  440 atgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||| |||||||||||| ||||||||||||| |||||||||||| ||||    
T  21998 atgaggatgttgcgctggatgagtggtaagactagacatgataggatta 22046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 33272401 - 33272337
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||  || ||||||||||||| |||||||||||| ||||    
T  33272401 agtaagtgtagcagagatgaggatgttgcattggatgagtggtaagactagacatgataggatta 33272337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 470
Target Start/End: Original strand, 45728055 - 45728101
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaaga 470  Q
    ||||||||||| ||| |||| |||||||||||| |||||||||||||    
T  45728055 agtaagtgtagcagagatgaggatgttgcgctggatgagtggtaaga 45728101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 51448080 - 51448018
Alignment:
Q  426 taagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||| ||| |||| ||||||||| || ||||||||||||| |||||| ||||| ||||    
T  51448080 taagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggatta 51448018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 489
Target Start/End: Complemental strand, 35043814 - 35043749
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtattat 489  Q
    |||||||||||  || |||| |||||||||||| |||| ||||||||||||||||||||| |||||    
T  35043814 agtaagtgtagcggagatgaagatgttgcgctggatgattggtaagattagacatgataggattat 35043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 28085285 - 28085349
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  28085285 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggatta 28085349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 9706685 - 9706749
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||||  || |||| |||||||| ||| ||||||||||||| |||||||||||| ||||    
T  9706685 agtaagtgtagcggagatgaggatgttgcactggatgagtggtaagactagacatgataggatta 9706749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 34869329 - 34869393
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  34869329 agtaagtgtagtagagatgaggatgttgcgttggatgagtggtaagactagacatgataggatta 34869393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 38606914 - 38606978
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||||  || ||||| ||||||||||| ||||||||||||| |||||||||||| ||||    
T  38606914 agtaagtgtagcggagatgataatgttgcgctggatgagtggtaagactagacatgataggatta 38606978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 488
Target Start/End: Original strand, 33072865 - 33072927
Alignment:
Q  426 taagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||| ||| |||||||||||||| || ||||||||||||| |||||| ||||| ||||    
T  33072865 taagtgtagcagagatgatgatgttgcgttggatgagtggtaagactagacaagataggatta 33072927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 31005132 - 31005196
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||| ||||| ||||    
T  31005132 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggatta 31005196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 32630504 - 32630568
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||||  || |||| ||||||| |||| ||||||||||||| |||||||||||| ||||    
T  32630504 agtaagtgtagcggagatgaggatgttgagctggatgagtggtaagactagacatgataggatta 32630568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 33350179 - 33350115
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||  || ||||||||||||| |||||||||||| ||||    
T  33350179 agtaagtgtagcagagatgaggatgttgccttggatgagtggtaagactagacatgataggatta 33350115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 35906574 - 35906510
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||| ||||| ||||    
T  35906574 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggatta 35906510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 49029185 - 49029249
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| |||||| || || ||||||||||||| |||||||||||| ||||    
T  49029185 agtaagtgtagcagagatgaggatgttacgttggatgagtggtaagactagacatgataggatta 49029249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 11593869 - 11593927
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgata 482  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||| ||||    
T  11593869 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacaggata 11593927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 44855543 - 44855481
Alignment:
Q  426 taagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||| ||| || | ||||||| |||| ||||||||||||| |||||||||||| ||||    
T  44855543 taagtgtagcagagatcaggatgttgtgctggatgagtggtaagactagacatgataggatta 44855481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 488
Target Start/End: Original strand, 37617856 - 37617917
Alignment:
Q  427 aagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||| ||| |||| ||||||||| || ||||||||||||| |||||| ||||| ||||    
T  37617856 aagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacaagataggatta 37617917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 12841648 - 12841584
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||| | || ||||||||||| | |||||||||||| ||||    
T  12841648 agtaagtgtagcagagatgaggatgttgtgttggatgagtggtaaaactagacatgataggatta 12841584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 36651903 - 36651967
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||  ||| |||| ||||||||| || ||||||||||||| |||||| ||||| ||||    
T  36651903 agtaagtgtaacagagatgaggatgttgcgttggatgagtggtaagactagacaggataggatta 36651967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 36869662 - 36869598
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||| | || ||||||||||||| | |||||||||| ||||    
T  36869662 agtaagtgtagcagagatgaggatgttgtgttggatgagtggtaagactggacatgataggatta 36869598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 45836837 - 45836789
Alignment:
Q  440 atgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||| |||||||||||| ||||||||||||| |||||| ||||| ||||    
T  45836837 atgaggatgttgcgctggatgagtggtaagagtagacaagataggatta 45836789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 1287962 - 1287898
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| |||||||||||| ||||    
T  1287962 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagacatgataggatta 1287898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 24178419 - 24178483
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| || ||||||||| ||||    
T  24178419 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactatacatgataggatta 24178483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 10639206 - 10639259
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagaca 477  Q
    ||||||||||| ||| |||| ||||||||| || ||||||||||||| ||||||    
T  10639206 agtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactagaca 10639259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 2075847 - 2075783
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| |||| ||||||||| || |||||| |||||| |||||| ||||| ||||    
T  2075847 agtaagtgtagcagagatgaggatgttgcgttggatgagttgtaagactagacaagataggatta 2075783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 3301753 - 3301817
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||||||||||  || |||  |||||||||||  ||||||||||||| |||||||||||| ||||    
T  3301753 agtaagtgtagcggagatggggatgttgcgcttgatgagtggtaagactagacatgataggatta 3301817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 470
Target Start/End: Complemental strand, 86980 - 86934
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaaga 470  Q
    |||||||||||| || |||| |||||||||||| |||||||||||||    
T  86980 agtaagtgtagaggagatgaggatgttgcgctggatgagtggtaaga 86934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 4633 - 4580
Alignment:
Q  436 agatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtattat 489  Q
    |||||||| ||||||||| || |||| |||||||| |||||||||||| |||||    
T  4633 agatatgaggatgttgcgttggatgaatggtaagactagacatgataggattat 4580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 25818 - 25754
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    ||||||||||| ||| || | ||||||| | || ||||||||||||| |||||||||||| ||||    
T  25818 agtaagtgtagcagagattaggatgttgtgttggatgagtggtaagactagacatgataggatta 25754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 11971 - 11907
Alignment:
Q  424 agtaagtgtagaagatatgatgatgttgcgctgaatgagtggtaagattagacatgatagtatta 488  Q
    |||| |||||| ||| |||| |||||||||||| ||||| ||||||| ||||||| |||| ||||    
T  11971 agtatgtgtagcagagatgaggatgttgcgctggatgagcggtaagactagacataataggatta 11907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University