View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_high_8 (Length: 470)
Name: NF16029_high_8
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 15 - 463
Target Start/End: Original strand, 43908716 - 43909164
Alignment:
| Q |
15 |
agaaaacagttgaagctctacctgctgaaaagccgaaaccaagatcagtgagaaggagacctctaaaaccaccacctgttgaaaacacagttaaagattt |
114 |
Q |
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| T |
43908716 |
agaaaacagttgaagctctacctgctgaaaagccgaaaccaagatcagtgagaaggagacctctaaaaccaccacctgttgaaaacacagttaaagattt |
43908815 |
T |
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| Q |
115 |
ttctgaaacaggtggtgcattggatgaagaaatgatattagatggacttttaatgcgatacgttaagaaacaaactcctaatgaacctggcatgggaaaa |
214 |
Q |
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| T |
43908816 |
ttctgaaacaggtggtgcattggatgaagaaatgatattagatggacttttaatgcgatacgttaacaaacaaactcctaatgaacctggcatgggaaaa |
43908915 |
T |
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| Q |
215 |
gaacatgtaaaggatcaaaatagaaggtatgaaaaatcaagttcacctgttgctaaaacttggagaagaaaatctcttcctcaaagagaatcaagtagga |
314 |
Q |
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| T |
43908916 |
gaacatgtaaaggatcaaaatagaaggtatgaaaaatcaagttcacctgttgctaaaacttggagaagaaaatctcttcctcaaagagaatcaagtagga |
43909015 |
T |
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| Q |
315 |
tggatacattacaagcaaatgatagagctacttccttagtacctgaaatgatgaggacaacaaccacagggcatgtgcatcctagtctaccagattatga |
414 |
Q |
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| T |
43909016 |
tggatacattacaagcaaatgatagagctacttccttagtacctgaaatgatgaggacaacaaccacagggcatgtgcatcctagtctaccagattatga |
43909115 |
T |
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| Q |
415 |
ggacttgtcggatcgtctagcatctctcagaagaacataatgccctatg |
463 |
Q |
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| T |
43909116 |
ggacttgtcggatcgtctagcatctctcagaagaacataatgccctatg |
43909164 |
T |
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