View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16029_low_1 (Length: 648)

Name: NF16029_low_1
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16029_low_1
NF16029_low_1
[»] chr8 (1 HSPs)
chr8 (10-632)||(45347345-45347971)


Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 10 - 632
Target Start/End: Original strand, 45347345 - 45347971
Alignment:
Q  10 gagagatgaaaagagggtcgaacacgttgatggtaccatgcaattgtgaagccattacctctcattcattttccttgttagttttaacactacaaataaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45347345 gagagatgaaaagagggtcgaacacgttgatggtaccatgcaattgtgaagccattacctctcattcattttccttgttagttttaacgctacaaataaa 45347444  T
Q  110 acctttgcttgtcaacctatctcaatttgactcttccttccttccttcctgtgtgcctcacaacttacacataatctctccctcccaacccgaggattca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45347445 acctttgcttgtcaacctatctcaatttgactcttccttccttccttcctgtgtgcctcacaacttacacataatctctcccccccaacccgaggattca 45347544  T
Q  210 aatatttacctgtcaactttctataacaaccacctgaaataaccgaattctggtgggctcattgttcaa---tattgtttcattttccaattttggatta 306  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||  ||||    
T  45347545 aatatttaactgtcaactttctataacaaccacctgaaataaccgaactctggtgggctcattgttcaatattattgtttcattttccaatttttaatta 45347644  T
Q  307 ttatttgatggtagttaatcatgaatcattttgacttgtttctattttttgcagtgt-nnnnnnnnnnnnnnnnnttaacttaagggagagggagagaga 405  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||                  |||||||||||||||||||||||||    
T  45347645 ttatttgatggtagttaatcatgaatcattctgacttgtttctattttttgcagtgtaaaaggaaaaagaaaaaattaacttaagggagagggagagaga 45347744  T
Q  406 tatatggtaggttcgacacataacggagggggagatagcggtaagtcattgatggaagacctcctcggacttctaaggatccacattaagcgtggcgtca 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45347745 tatatggtaggttcgacacataacggagggggagatagcggtaagtcattgatggaagacctcctcggacttctaaggatccgcattaagcgtggcgtca 45347844  T
Q  506 acctcgccgttcgtgatgttaatactagtgatccatatgccgtcgttaagatgggcaagcaggttatctttctatttccatcatcctaagttccttcctt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45347845 acctcgccgttcgtgatgttaatactagtgatccatatgccgtcgttaagatgggcaagcaggttatctttctatttccatcatcctaagttccttcctt 45347944  T
Q  606 tgattttatctatatttatgtgcagtg 632  Q
    |||||||||||||||||||||||||||    
T  45347945 tgattttatctatatttatgtgcagtg 45347971  T

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