View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16029_low_10 (Length: 348)
Name: NF16029_low_10
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_low_10 |
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| [»] chr4 (9 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 16868142 - 16867795
Alignment:
| Q |
1 |
aacaagctatacacactaggcattaatcaatttgccgacctcaccaacgacgagttcacatcgtctagaaacaagttcaaggggcatatgtgctcttcaa |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16868142 |
aacaagctatacacactaggcgttaatcaatttgccgacctcaccaacgacgagttcacatcgtctagaaacaagttcaaggggcatatgtgctcttcaa |
16868043 |
T |
|
| Q |
101 |
tcacaaggacaagtacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggacgaagaaaggagccgttacacctgtgaagaaccaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
16868042 |
tcacaaggacaagtacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggaggaagaaaggagcagttacacctgtgaagaaccaagg |
16867943 |
T |
|
| Q |
201 |
acaatgtggtacatgttcatctcataagtaacgtattcaatgatttgaaattatttatcgtctaactctagttaattttaatttaccttttgtaggatgt |
300 |
Q |
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|
|||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16867942 |
acaatgtggtacgtgttcatctcataagtaacatattcaatgattcgaaattatttatcgtctaactctagttaattttaatttaccttttgtaggatgt |
16867843 |
T |
|
| Q |
301 |
tgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttg |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16867842 |
tgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttg |
16867795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 30720330 - 30720123
Alignment:
| Q |
1 |
aacaagctatacacactaggcattaatcaatttgccgacctcaccaacgacgagttcacatcgtctagaaacaagttcaaggggcatatgtgctcttcaa |
100 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||||| |||||||||||||| ||||||| | | ||||||||||| ||||| || ||||||||||| |||| |
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| T |
30720330 |
aacaagttatacaaattaggcattaatcaatttgcagacctcaccaacgaggagttcatagcatctagaaacaaattcaaaggtcatatgtgctcctcaa |
30720231 |
T |
|
| Q |
101 |
tcacaaggacaagtacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggacgaagaaaggagccgttacacctgtgaagaaccaagg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| || ||||| |||||||||||||| |
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| T |
30720230 |
tcacaaagacaagtacttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggagaaagaaaggagcagtaacaccagtgaagaaccaagg |
30720134 |
T |
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| Q |
201 |
acaatgtggta |
211 |
Q |
| |
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|||||||||| |
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| T |
30720133 |
tcaatgtggta |
30720123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30881029 - 30881236
Alignment:
| Q |
1 |
aacaagctatacacactaggcattaatcaatttgccgacctcaccaacgacgagttcacatcgtctagaaacaagttcaaggggcatatgtgctcttcaa |
100 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||||| |||||||||||||| ||||||| | | ||||||||||| ||||| || ||||||||||| |||| |
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| T |
30881029 |
aacaagttatacaaattaggcattaatcaatttgcagacctcaccaacgaggagttcatagcatctagaaacaaattcaaaggtcatatgtgctcctcaa |
30881128 |
T |
|
| Q |
101 |
tcacaaggacaagtacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggacgaagaaaggagccgttacacctgtgaagaaccaagg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| || ||||| |||||||||||||| |
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| T |
30881129 |
tcacaaagacaagtacttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggagaaagaaaggagcagtaacaccagtgaagaaccaagg |
30881225 |
T |
|
| Q |
201 |
acaatgtggta |
211 |
Q |
| |
|
|||||||||| |
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| T |
30881226 |
tcaatgtggta |
30881236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 44731768 - 44731558
Alignment:
| Q |
1 |
aacaagctatacacactaggcattaatcaatttgccgacctcaccaacgacgagttcacatcgtctagaaacaagttcaaggggcatatgtgctcttcaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||| | | ||||||||||| |||||||| ||||||||||| |||| |
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| T |
44731768 |
aacaagctatacaagttaggcattaatcaatttgcagacctcaccaatgaagagttcatagcatctagaaacaaattcaagggtcatatgtgctcctcaa |
44731669 |
T |
|
| Q |
101 |
tcacaaggacaagtacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggacgaagaaaggagccgttacacctgtgaagaaccaagg |
200 |
Q |
| |
|
|| | | |||| |||||||||||||||||||| ||||||||| || ||| | |||||||||| |||||||||||| || |||||||||||||||||||| |
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|
| T |
44731668 |
tcgcgaaaacaactacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaagg |
44731569 |
T |
|
| Q |
201 |
acaatgtggta |
211 |
Q |
| |
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|||||||||| |
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|
| T |
44731568 |
tcaatgtggta |
44731558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30892112 - 30892319
Alignment:
| Q |
1 |
aacaagctatacacactaggcattaatcaatttgccgacctcaccaacgacgagttcacatcgtctagaaacaagttcaaggggcatatgtgctcttcaa |
100 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||||| ||| |||||||||| ||||||| | | ||||||||||| ||||| || ||||||||||| |||| |
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|
| T |
30892112 |
aacaagttatacaaattaggcattaatcaatttgcagacatcaccaacgaggagttcatagcatctagaaacaaattcaaaggtcatatgtgctcctcaa |
30892211 |
T |
|
| Q |
101 |
tcacaaggacaagtacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggacgaagaaaggagccgttacacctgtgaagaaccaagg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||| || ||||| |||||||||||||| |
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| T |
30892212 |
tcacaaagacaagtacttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggagaaagaaaggagcagtaacaccagtgaagaaccaagg |
30892308 |
T |
|
| Q |
201 |
acaatgtggta |
211 |
Q |
| |
|
|||||||||| |
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|
| T |
30892309 |
tcaatgtggta |
30892319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 264 - 348
Target Start/End: Complemental strand, 30720057 - 30719972
Alignment:
| Q |
264 |
aactctagttaattttaatttacctttt-gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
30720057 |
aactctagttaattttaatttacctttttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttg |
30719972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 264 - 348
Target Start/End: Original strand, 30892385 - 30892470
Alignment:
| Q |
264 |
aactctagttaattttaatttacctttt-gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |
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| T |
30892385 |
aactctagttaattttaatttacctttttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttg |
30892470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 30881305 - 30881387
Alignment:
| Q |
267 |
tctagttaattttaatttacctttt-gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttg |
348 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
30881305 |
tctagttaattttaatttacctttttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttg |
30881387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 348
Target Start/End: Complemental strand, 44731496 - 44731408
Alignment:
| Q |
263 |
taactctagttaatttt-aatttacctttt--gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttg |
348 |
Q |
| |
|
||||| || |||||||| ||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |
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|
| T |
44731496 |
taactataattaatttttaatttacgtttttcgtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttg |
44731408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 8898655 - 8899002
Alignment:
| Q |
9 |
atacacactaggcattaatcaatttgccgacctcaccaacgacgagttcacatcgtctagaaacaagttcaaggggcatatgtgctcttcaatcacaagg |
108 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| || ||||| | | ||||| ||||| |||||||| ||||||||||| ||||||| |||| |
|
|
| T |
8898655 |
atacaaactaggcattaatcaatttgcagacctcaccaatgaggagtttgtagcatctaggaacaaattcaagggacatatgtgctcatcaatcataagg |
8898754 |
T |
|
| Q |
109 |
acaagtacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggacgaagaaaggagccgttacacctgtgaagaaccaaggacaatgtg |
208 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| ||||| | |||||||||| |||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
8898755 |
acaactacttttaagtatgaaaatgtaagtgcaatcccatctacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggccaatgtg |
8898854 |
T |
|
| Q |
209 |
gtacatgttcatctcataagtaacgtattcaa-------tgatttgaaatt-atttatcgtctaactctagttaattttaatttaccttttgtaggatgt |
300 |
Q |
| |
|
|||| | | |||| | || ||| | ||| || |||| ||||| | || || |||||||| || |||||||| || | ||||||||||||| |
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|
| T |
8898855 |
gtacgtttctatctaaaaactaatgcatttaattcaatgtgatcaaaaattgaattttcatctaactcgggtaaattttaacttgcattttgtaggatgt |
8898954 |
T |
|
| Q |
301 |
tgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8898955 |
tgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttg |
8899002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 289 - 348
Target Start/End: Original strand, 31727101 - 31727160
Alignment:
| Q |
289 |
tttgtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttg |
348 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
31727101 |
tttgtaggatgttgttgggcgttttctgcggttgcatcaaccgaaggaattcataagttg |
31727160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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