View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_low_24 (Length: 231)
Name: NF16029_low_24
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 4155131 - 4155224
Alignment:
| Q |
112 |
ccttcaataattgcagcatggaaatgatgaatgctatctaaacacgatcgaggcctgcgccattaatatatatccagacgtggtacacttctta |
205 |
Q |
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| T |
4155131 |
ccttcaataattgcagcatggaaatgatgaatgctatctaaacacgatcgaggcctgcgccattaatatatatccagacgtggtacagttctta |
4155224 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 4160300 - 4160396
Alignment:
| Q |
117 |
aataattgcagcatggaaatgatgaatgctatctaaacacgatcgaggcctgcgccattaatatatatccagacgtggtacacttcttacctatgaa |
213 |
Q |
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| T |
4160300 |
aataattgcagcatggaaatgatgaatgcttgctaaactcgatcgaggcctgcaccattaaagcatatgcagacgtggtacagttcctacctatgaa |
4160396 |
T |
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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 4155021 - 4155076
Alignment:
| Q |
34 |
aattataagaaaatgttatcaagtcacttttaagttatctaatgaaaaccacttgc |
89 |
Q |
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| T |
4155021 |
aattataagaaaatgttaacaagtcacttttaagttatctcatgaaaaccacttgc |
4155076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4154959 - 4155008
Alignment:
| Q |
1 |
ctctttttaaaactggaatatatgcatatccataattataagaaaatgtt |
50 |
Q |
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| T |
4154959 |
ctctttttaaaactggaatatatgtatgtccataattataagaaaatgtt |
4155008 |
T |
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