View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_low_6 (Length: 496)
Name: NF16029_low_6
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 25 - 487
Target Start/End: Original strand, 29142953 - 29143418
Alignment:
| Q |
25 |
tgtcgtataggaatggcatttaacaaaagaatatctgggattggaaagcaatcatcaaagggagaaactaaataaaaaagttattcatgattattcacct |
124 |
Q |
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| T |
29142953 |
tgtcatataggaatggcatttaacaaaagaatatctgcgattggaaagcaatcatcaaagcgagaaactaaataaaaaagttattcatgattattcacct |
29143052 |
T |
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| Q |
125 |
attaattcgataacgattaaattaacaaagagcataaagaatataaacaattagctaaatcgaaataaacatctattgtataatcaaatgagaattaaat |
224 |
Q |
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| T |
29143053 |
attaattcgataacgattaaattaacaaagagcataaagaatataaacaattagctaaatcgaaataaacatctattgcataatcaaatgagaattaaat |
29143152 |
T |
|
| Q |
225 |
tacaatcaaggagggttaatcaaatcctagtataaaaagtttagcaaacacaaacatggaaaacgatacaattgcatacgttg---atagccattgaatc |
321 |
Q |
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| T |
29143153 |
tacaatcaaggagggttaaccaaatcctagtataaaaagtttagcaaacacaaacatggaaaacgatacaattgcatacgttgataatagccattgaagc |
29143252 |
T |
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| Q |
322 |
ttcactatcttgttcccaatgatgaatcttcaattttttatgcattcacattgtttatgcccttctttgtacgtatatcccaatgtccaaagatatttgg |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29143253 |
ttcactatcttgttcccaatgatgaatcttcaatttttgatgcattcacattgtttatgcccttctttgtacgtatatcccaatgtccaaagatacttgg |
29143352 |
T |
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| Q |
422 |
agtttcatataaaatccgttaatccagagttcggtcggagataaataaaatttggacaagaattat |
487 |
Q |
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| T |
29143353 |
agtttaatataaaacccgttaattcagagttcggtcgaagataaataaagtttggacaagaattat |
29143418 |
T |
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