View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_low_7 (Length: 489)
Name: NF16029_low_7
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 53790004 - 53790454
Alignment:
| Q |
18 |
gtttgctcggtaaatcttacacatgtgaccatacaaacattcatttccgtttctggaacccagccacaagggtaatatcaaaagaattaggatgttttca |
117 |
Q |
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| T |
53790004 |
gtttgctccgtaaatcttacacatctgaccatacaaacattcatttccgtttctggaacccggccacaagggtaatatcaaaagaattaggatcttttca |
53790103 |
T |
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| Q |
118 |
acaatctaactatcatgcacatgataggcataggtacacatttggttatgataacttcactggatcttataaggtagtgttaatgtgttctggcatggtg |
217 |
Q |
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| T |
53790104 |
acaatctaactatcatgcacatgataggcataggtacatatttggttatgataacttcactggatcttacaaggtagtgttaatgtgttctggcaaggtg |
53790203 |
T |
|
| Q |
218 |
aaaattttcaatataggtgataatatttggactgaaatttcaagttttcctcgttttgagcacgatgtttctcttggctctgatcgtgtgaataatggag |
317 |
Q |
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| T |
53790204 |
aaaattttcaatataggtgataatatttggactgaaatttcaagttttcctcgttttgaccacgatgtttctcttggctctgatcgtgtgaataatggag |
53790303 |
T |
|
| Q |
318 |
tgtatttgaatggaactgttaactggattgcctttcaagatgatttgagttgtagtacttattctaggatccagagggatactcctcttgagcaatatat |
417 |
Q |
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| T |
53790304 |
tgtatttgaatggaactgttaactggattgcctttcaagatgatttgagttgtagtacttattcttggatgcagagggatactactcttgagcaatatat |
53790403 |
T |
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| Q |
418 |
gattatatcgcttgatcttggtacggagacatacaaacaattgcagcctcc |
468 |
Q |
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| T |
53790404 |
gattatcttgcttgatcttggtacggagacatacaaacaattgcagcctcc |
53790454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 459
Target Start/End: Complemental strand, 19326206 - 19326154
Alignment:
| Q |
407 |
gagcaatatatgattatatcgcttgatcttggtacggagacatacaaacaatt |
459 |
Q |
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| T |
19326206 |
gagcaatttatgattatctcccttgatcttggtactgagacatacaagcaatt |
19326154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 296
Target Start/End: Complemental strand, 19326443 - 19326296
Alignment:
| Q |
149 |
aggtacacatttggttatgataacttcactggatcttataaggtagtgttaatgtgttctggcatggtgaaaattttcaatataggtgataatatttgga |
248 |
Q |
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|||| ||||||||| |||||||| | |||||| |||||||||| ||| | || ||||| | ||||||| |||||| | | ||||||||||||||| |
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| T |
19326443 |
aggttcacatttgggtatgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttgga |
19326344 |
T |
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| Q |
249 |
ctgaaatttcaagttttcctcgttttgagcacgatgtttctcttggct |
296 |
Q |
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| T |
19326343 |
gaaaaatttcaagctttcctccttttgaccatgctgttactcttggct |
19326296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 457
Target Start/End: Complemental strand, 22473365 - 22473323
Alignment:
| Q |
415 |
tatgattatatcgcttgatcttggtacggagacatacaaacaa |
457 |
Q |
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| T |
22473365 |
tatgattatatctcttgatctaggtacagagacatacaaacaa |
22473323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 24254649 - 24254595
Alignment:
| Q |
405 |
ttgagcaatatatgattatatcgcttgatcttggtacggagacatacaaacaatt |
459 |
Q |
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| T |
24254649 |
ttgagcaattcatgattatctcccttgatcttggtactgagacatacaagcaatt |
24254595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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