View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16029_low_9 (Length: 354)
Name: NF16029_low_9
Description: NF16029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16029_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 200 - 342
Target Start/End: Complemental strand, 22100958 - 22100816
Alignment:
| Q |
200 |
tatagaaataacacaaccaatttcatcactttggttttagttatttgtaccttcttatttttgacagctgatatcccttcacagagttgatgttctaggt |
299 |
Q |
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| T |
22100958 |
tatagaaataacacaaccaattgcatcactttggttttagatatttgtaccttcttatttttgacagctgatatcccttcacagagttgatgttctaggt |
22100859 |
T |
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| Q |
300 |
actgcagttctttaaggcccaatccatcaagctccttacccct |
342 |
Q |
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| T |
22100858 |
actgcagttctttaaggcccaatccatcaagctccttacccct |
22100816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 22101099 - 22100964
Alignment:
| Q |
17 |
aacatttctattccaagtaataggtttgacatgtactgaaaaataggcccatcattttatttataattagttataaaaggtttcattttagaatttgttt |
116 |
Q |
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| T |
22101099 |
aacatttctattccaactaataggtttgacatgtactgaaaaataggcccatcattttatttataattagttataaaaggtttcattttagaatttgttt |
22101000 |
T |
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| Q |
117 |
tagtccttcataccattggatctgccctgcatctaa |
152 |
Q |
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| T |
22100999 |
tagtccttcataccattggatctgccctgcatctaa |
22100964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 38211847 - 38212005
Alignment:
| Q |
21 |
tttctattccaagtaataggtttgacatgtactgaaaaataggcccatcattttatttataattagttataaaaggtttcattttagaatttgttttagt |
120 |
Q |
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| T |
38211847 |
tttctattccaaataataggtctgacatctacttaaaaacaagcccatgattttactt----ttagttataaaagatttcattttaaaatttgatttagt |
38211942 |
T |
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| Q |
121 |
---------ccttcataccattggatctgccctgcatctaagttatcttgatcatattacatggat |
177 |
Q |
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| T |
38211943 |
catgtcctacctacataccatagggtctgccttgcatctaa---atcttgatcatattacatggat |
38212005 |
T |
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