View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_14 (Length: 397)
Name: NF1602_high_14
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 49272090 - 49271721
Alignment:
| Q |
14 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacatac |
113 |
Q |
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| T |
49272090 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacacac |
49271991 |
T |
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| Q |
114 |
aagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271990 |
aagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctc |
49271891 |
T |
|
| Q |
214 |
actgacctcaccattgagattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgagca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271890 |
actgacctcaccattgagattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgagca |
49271791 |
T |
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| Q |
314 |
ctggtggtacagctggggatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatga |
383 |
Q |
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| T |
49271790 |
ctggtggtgcagctggggatcttgttagcaagttcaagattgagaggcttgcaggtgaacatgcttatga |
49271721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 49278013 - 49277753
Alignment:
| Q |
14 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacatac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
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| T |
49278013 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggctgacaatggaggcataacattaggacaaac |
49277914 |
T |
|
| Q |
114 |
aagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctc |
213 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| || || ||| | || || ||||||| || || | | ||||||||||||||||||| |
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| T |
49277913 |
aagaaacaaaacatgccctcttgatgttatccgtaaccctgaagccattggctcgccagtttatttctatgaatatgaacatgattacattccaactctc |
49277814 |
T |
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| Q |
214 |
actgacctcaccattgagattcctattctgggtagtccttgcaatgaaccaaaagtgtgga |
274 |
Q |
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| T |
49277813 |
actgatctcaccgttgagattccaatattgggtagtccttgcagtgagagaaaagtgtgga |
49277753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 112 - 364
Target Start/End: Complemental strand, 49269544 - 49269292
Alignment:
| Q |
112 |
acaagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactc |
211 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||| | | | ||||| | || ||||| ||||||||| ||||| || | |||||||||||| |
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| T |
49269544 |
acaagaaacaaaacatgtcctcttgatgtaattcgtaaccctaaagaactcggctcgccagtgtacttctctgcaccaggttttaaacacattccaactc |
49269445 |
T |
|
| Q |
212 |
tcactgacctcaccattgagattcctattctgggtagtccttgcaatgaaccaaaagtgtggaggcttttaaaggttgggtctgggttttggtttgtgag |
311 |
Q |
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||||| || ||||| | |||| || | ||||| | ||||| | ||||||||| || ||||| ||| | || |||||||| |||||| |||| |
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| T |
49269444 |
aaactgatctttccattaaaattcgatttaggagtagttcatgcaaccagtcaaaagtgttgaagctttcaaaagagggatctgggttctggtttttgag |
49269345 |
T |
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| Q |
312 |
cactggtggtacagctggggatcttgttagcaagttcaaaattgagaggcttg |
364 |
Q |
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|||||||||| |||||||||| ||||||| |||||||| ||||||| ||||| |
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| T |
49269344 |
cactggtggtgtagctggggatgttgttagtaagttcaagattgagaagcttg |
49269292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 49277725 - 49277638
Alignment:
| Q |
296 |
ggttttggtttgtgagcactggtggtacagctggggatcttgttagcaagttcaaaattgagaggcttgcaggtgaacatgcttatga |
383 |
Q |
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||||||||||||||||||| |||||| ||||| | ||| ||||| |||| || ||||||||||||| || |||||||||||||| |
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| T |
49277725 |
ggttttggtttgtgagcaccggtggttttcctgggaacctttttagccagtttaagattgagaggcttgagggagaacatgcttatga |
49277638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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