View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_high_16 (Length: 390)

Name: NF1602_high_16
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_high_16
NF1602_high_16
[»] chr7 (7 HSPs)
chr7 (13-290)||(1545776-1546053)
chr7 (95-170)||(1616511-1616586)
chr7 (91-176)||(1100301-1100386)
chr7 (197-279)||(12468787-12468868)
chr7 (207-268)||(15682713-15682774)
chr7 (356-390)||(1545676-1545710)
chr7 (356-390)||(12468944-12468978)
[»] chr2 (4 HSPs)
chr2 (197-290)||(17162148-17162241)
chr2 (207-261)||(13370250-13370304)
chr2 (207-286)||(16467450-16467530)
chr2 (356-390)||(21498168-21498202)
[»] chr3 (10 HSPs)
chr3 (195-275)||(25466339-25466419)
chr3 (197-273)||(4022896-4022973)
chr3 (195-290)||(53589262-53589358)
chr3 (207-290)||(1744957-1745040)
chr3 (207-270)||(25321072-25321135)
chr3 (195-276)||(17132561-17132642)
chr3 (356-390)||(15987586-15987620)
chr3 (217-273)||(4026548-4026605)
chr3 (207-271)||(17439312-17439377)
chr3 (356-390)||(17439165-17439199)
[»] chr8 (10 HSPs)
chr8 (201-276)||(22455268-22455343)
chr8 (197-273)||(32352042-32352118)
chr8 (197-273)||(32368703-32368779)
chr8 (197-260)||(28291750-28291813)
chr8 (127-170)||(18727008-18727051)
chr8 (356-390)||(19709544-19709578)
chr8 (211-290)||(22450208-22450288)
chr8 (127-170)||(18734287-18734330)
chr8 (356-390)||(22450075-22450109)
chr8 (356-390)||(23355471-23355505)
[»] chr4 (5 HSPs)
chr4 (195-268)||(24924727-24924801)
chr4 (207-288)||(21823526-21823607)
chr4 (209-290)||(16288610-16288692)
chr4 (356-390)||(24924890-24924924)
chr4 (232-273)||(18553189-18553230)
[»] chr6 (3 HSPs)
chr6 (197-261)||(34992220-34992284)
chr6 (356-390)||(17352720-17352754)
chr6 (197-285)||(16434215-16434303)
[»] chr1 (2 HSPs)
chr1 (197-253)||(13966266-13966322)
chr1 (217-273)||(13962750-13962807)
[»] chr5 (2 HSPs)
chr5 (197-273)||(10235913-10235988)
chr5 (358-390)||(21390680-21390712)
[»] scaffold0003 (1 HSPs)
scaffold0003 (197-245)||(89631-89679)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 1546053 - 1545776
Alignment:
Q  13 aatataaggattagtaattataggatgaaaatgaagnnnnnnnnnnttatttaaggaactcagcattcaaattaaacgtattctaatctaaaatattatg 112  Q
    |||||||||||||||||| ||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1546053 aatataaggattagtaatcataggatgaaaatgaaaaaaaaaaaaattatttaaggaactcagcattcaaattaaacgtattctaatctaaaatattatg 1545954  T
Q  113 tgcgtgtgttagattgtgtcattgtactgcaaaacattaaattatgtgagagaggacaaaacatattgtgcaatcnnnnnnnagaaaatacataaatgtt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  1545953 tgcgtgtgttagattgtgtcattgtactgcaaaacattaaattatgtgagagaggacaaaacatattgtgcaatctttttttagaaaatacataaatgtt 1545854  T
Q  213 cattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataactgcctctcgatagaga 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1545853 cattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataactgcctctcgatagaga 1545776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 1616511 - 1616586
Alignment:
Q  95 ctaatctaaaatattatgtgcgtgtgttagattgtgtcattgtactgcaaaacattaaattatgtgagagaggaca 170  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  1616511 ctaatctaaaatattatgtgcgcgtgttggattgtgtcattgtactgcacaacattaaattatgtgacagaggaca 1616586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 1100301 - 1100386
Alignment:
Q  91 tattctaatctaaaatattatgtgcgtgtgttagattgtgtcattgtactgcaaaacattaaattatgtgagagaggacaaaacat 176  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||| |||| |||||    
T  1100301 tattctaatcttaaatattatgtgcgcgtgttagattgtgtcattgcactgcccaacattaaattatgtgagagaagacataacat 1100386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 12468787 - 12468868
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataactgcct 279  Q
    |||||| || ||||||||| |||||||||   || |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  12468787 aaaatatatgaatgttcatcatattcatagactgctttatgac-aagatgaagaaaactgtttttgtatgaagataactgcct 12468868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 15682713 - 15682774
Alignment:
Q  207 aatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaa 268  Q
    ||||||||| ||||||||  ||||||||||||| |||||||||||||| |||||| ||||||    
T  15682713 aatgttcatcatattcatgtgttgttttatgaacaagatgaagaaaatcgtttttatatgaa 15682774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 1545710 - 1545676
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    |||||||||||||||||||||||||||||||||||    
T  1545710 ttgcattgcattaatgtaaatgtggttcgacaaat 1545676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 12468944 - 12468978
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    |||||||||||||| ||||||||||||||||||||    
T  12468944 ttgcattgcattaaagtaaatgtggttcgacaaat 12468978  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 17162241 - 17162148
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataactgcctctcgatagaga 290  Q
    ||||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |||| |||||    
T  17162241 aaaatacatgaatgttcatcatattcataggttgctttatgaataagatgaagaaaactgtttttgtatgaagataattgcctttcgacagaga 17162148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 13370250 - 13370304
Alignment:
Q  207 aatgttcattatattcataagttgttttatgaataagatgaagaaaattgttttt 261  Q
    ||||||||| |||||||||  || ||||||||| |||||||||||||||||||||    
T  13370250 aatgttcatcatattcatagtttattttatgaacaagatgaagaaaattgttttt 13370304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 16467530 - 16467450
Alignment:
Q  207 aatgttcattatattcataagttgttttatgaataagatgaagaaaattg-tttttgtatgaagataactgcctctcgata 286  Q
    ||||||||| ||| |||||  |||||||||||| |||||||| |||| || ||||||||||| |||||||| || ||||||    
T  16467530 aatgttcatcatactcatagtttgttttatgaacaagatgaataaaactgttttttgtatgacgataactgtctttcgata 16467450  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 21498202 - 21498168
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    |||||||||||||||||||| ||||||||||||||    
T  21498202 ttgcattgcattaatgtaaaagtggttcgacaaat 21498168  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 25466339 - 25466419
Alignment:
Q  195 agaaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataact 275  Q
    |||||||| || ||||||||| ||||||||| ||||||||| ||| ||||||||||||| |||||||||||||| ||||||    
T  25466339 agaaaatatatgaatgttcatcatattcataggttgttttacgaacaagatgaagaaaactgtttttgtatgaaaataact 25466419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 4022973 - 4022896
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattg-tttttgtatgaagataa 273  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||  | |||||||||||||||||    
T  4022973 aaaatacatgaatgttcatcatattcataggttgttttatgaacaagatgaagaaaaccgttttttgtatgaagataa 4022896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 290
Target Start/End: Complemental strand, 53589358 - 53589262
Alignment:
Q  195 agaaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaa-ttgtttttgtatgaagataactgcctctcgatagaga 290  Q
    ||||||||||| ||||||||| ||||||||| |||| |||||||| |||||||| ||||    ||||||||||||||||| ||||| |||| |||||    
T  53589358 agaaaatacatgaatgttcatcatattcatatgttgctttatgaacaagatgaataaaaccattttttgtatgaagataattgcctttcgacagaga 53589262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 1744957 - 1745040
Alignment:
Q  207 aatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataactgcctctcgatagaga 290  Q
    ||||||||| ||||| ||| |||| ||||| || ||||||||||||| ||||||||||||||||||| || || |||| |||||    
T  1744957 aatgttcatcatatttataggttgctttataaacaagatgaagaaaactgtttttgtatgaagataattgtctttcgacagaga 1745040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 25321072 - 25321135
Alignment:
Q  207 aatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaaga 270  Q
    ||||||||| ||||||||| |||| |||||||| ||||||||||||| || |||||||||||||    
T  25321072 aatgttcatcatattcataggttgctttatgaacaagatgaagaaaactgcttttgtatgaaga 25321135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 17132561 - 17132642
Alignment:
Q  195 agaaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataactg 276  Q
    ||||||||||| ||| ||||| |||||||||  ||  |||||||| |||||||| |||| | ||||||||||||||||||||    
T  17132561 agaaaatacatgaatattcatcatattcatagtttcctttatgaacaagatgaataaaactatttttgtatgaagataactg 17132642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 15987586 - 15987620
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    |||||||||||||||||||||||||||||||||||    
T  15987586 ttgcattgcattaatgtaaatgtggttcgacaaat 15987620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 4026605 - 4026548
Alignment:
Q  217 atattcataagttgttttatgaataagatgaagaaaattg-tttttgtatgaagataa 273  Q
    ||||||||| ||||||||||||| |||| |||||||| || |||||||||||||||||    
T  4026605 atattcataggttgttttatgaacaagaagaagaaaactgttttttgtatgaagataa 4026548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 17439377 - 17439312
Alignment:
Q  207 aatgttcattatattcataagttgttttatgaataagatgaagaaaattgt-ttttgtatgaagat 271  Q
    ||||||||| ||||||||| ||||  ||||||| |||| |||||||||||| ||||||||||||||    
T  17439377 aatgttcatcatattcataggttggattatgaacaagaagaagaaaattgttttttgtatgaagat 17439312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 17439199 - 17439165
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    ||||||||||||||||||||||| |||||||||||    
T  17439199 ttgcattgcattaatgtaaatgtagttcgacaaat 17439165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 22455343 - 22455268
Alignment:
Q  201 tacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataactg 276  Q
    ||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||  ||||||||||||| |||||||    
T  22455343 tacatgaatgttcatcatattcataggttgctttatgaataagatgaagaaaaccgtttttgtatgaaaataactg 22455268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 32352042 - 32352118
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataa 273  Q
    ||||||||| ||||||| | ||||||||| |||  |||||||| ||||||||| ||| |||||||||||||||||||    
T  32352042 aaaatacatgaatgttcgtcatattcataggttaatttatgaacaagatgaaggaaactgtttttgtatgaagataa 32352118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 32368703 - 32368779
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataa 273  Q
    ||||||||| ||||||| | ||||||||| |||  |||||||| ||||||||| ||| |||||||||||||||||||    
T  32368703 aaaatacatgaatgttcgtcatattcataggttaatttatgaacaagatgaaggaaactgtttttgtatgaagataa 32368779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 28291813 - 28291750
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttt 260  Q
    ||||| ||||||||||||| ||||||||| |||  |||||||| ||||||||||||||||||||    
T  28291813 aaaatgcataaatgttcatcatattcataggttactttatgaacaagatgaagaaaattgtttt 28291750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 18727051 - 18727008
Alignment:
Q  127 tgtgtcattgtactgcaaaacattaaattatgtgagagaggaca 170  Q
    ||||||||||||||||| |||||||||||||| |||||||||||    
T  18727051 tgtgtcattgtactgcacaacattaaattatgagagagaggaca 18727008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 19709578 - 19709544
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    |||||||||||||||||||||||||||||||||||    
T  19709578 ttgcattgcattaatgtaaatgtggttcgacaaat 19709544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 22450288 - 22450208
Alignment:
Q  211 ttcattatattcataagttgttttatgaataagatgaagaaaa-ttgtttttgtatgaagataactgcctctcgatagaga 290  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||| |  ||||| |||||| ||||||| || |||| |||||    
T  22450288 ttcatcatattcataggttgttttatgaacaagatgaagaaaactattttttatatgaaaataactgtctttcgacagaga 22450208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 18734330 - 18734287
Alignment:
Q  127 tgtgtcattgtactgcaaaacattaaattatgtgagagaggaca 170  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||    
T  18734330 tgtgttattgtactgcacaacattaaattatgagagagaggaca 18734287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 22450109 - 22450075
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    ||||||||||||||||| |||||||||||||||||    
T  22450109 ttgcattgcattaatgttaatgtggttcgacaaat 22450075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 23355471 - 23355505
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    |||||||||||||||||||| ||||||||||||||    
T  23355471 ttgcattgcattaatgtaaaggtggttcgacaaat 23355505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 24924727 - 24924801
Alignment:
Q  195 agaaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttt-tgtatgaa 268  Q
    ||||||||||||||||||||| ||||||| | |||| |||||||| |||||||||||||||||||| ||||||||    
T  24924727 agaaaatacataaatgttcatcatattcacaggttgctttatgaacaagatgaagaaaattgttttgtgtatgaa 24924801  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 21823526 - 21823607
Alignment:
Q  207 aatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataactgcctctcgataga 288  Q
    ||||||||| |||||||| | |||||||||||| ||||||||  ||||| ||||||||| ||||||||||| | ||||||||    
T  21823526 aatgttcatcatattcatgatttgttttatgaacaagatgaatgaaattatttttgtataaagataactgcttttcgataga 21823607  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 16288610 - 16288692
Alignment:
Q  209 tgttcattatattcataagttgttttatgaataagatgaagaaaattgttttt-gtatgaagataactgcctctcgatagaga 290  Q
    ||||||| | ||||||| ||||||||||||  ||||||||||||| ||||||| |||| ||||||||| ||| |||| |||||    
T  16288610 tgttcatcaaattcataggttgttttatgagcaagatgaagaaaactgtttttcgtataaagataactccctatcgacagaga 16288692  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 24924890 - 24924924
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    |||||||||||||||||||| ||||||||||||||    
T  24924890 ttgcattgcattaatgtaaaggtggttcgacaaat 24924924  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 18553189 - 18553230
Alignment:
Q  232 tttatgaataagatgaagaaaattgtttttgtatgaagataa 273  Q
    |||||||| |||||||| |||| |||||||||||||||||||    
T  18553189 tttatgaacaagatgaataaaactgtttttgtatgaagataa 18553230  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 34992220 - 34992284
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgttttt 261  Q
    ||||||||| ||||||||| ||||||||| |||| |||||||| |||||||| ||||||||||||    
T  34992220 aaaatacatgaatgttcatcatattcataggttgctttatgaacaagatgaataaaattgttttt 34992284  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 17352720 - 17352754
Alignment:
Q  356 ttgcattgcattaatgtaaatgtggttcgacaaat 390  Q
    |||||||||||||||||||||||||||||||||||    
T  17352720 ttgcattgcattaatgtaaatgtggttcgacaaat 17352754  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 16434215 - 16434303
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgt-atgaagataactgcctctcgat 285  Q
    |||||| || |||||||||||||| ||| ||||  |||||||| |||||||| |||| | ||||||| ||||||||||||| || |||||    
T  16434215 aaaatatatgaatgttcattatatccatgagtttatttatgaaaaagatgaataaaact-tttttgtgatgaagataactgtctttcgat 16434303  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 13966266 - 13966322
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaa 253  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  13966266 aaaatacatgaatgttcatcatattcataggttgttttatgaacaagatgaagaaaa 13966322  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 13962750 - 13962807
Alignment:
Q  217 atattcataagttgttttatgaataagatgaagaaaattg-tttttgtatgaagataa 273  Q
    ||||||||| ||||||||||||| |||||||||||||  | |||||||||||||||||    
T  13962750 atattcataggttgttttatgaacaagatgaagaaaaccgttttttgtatgaagataa 13962807  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 10235913 - 10235988
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagatgaagaaaattgtttttgtatgaagataa 273  Q
    ||||||||| ||||||||| || ||||||  ||| |||||||| ||||| || ||||||||||||||||||| ||||    
T  10235913 aaaatacatgaatgttcatcat-ttcatagtttgctttatgaacaagatcaataaaattgtttttgtatgaaaataa 10235988  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 358 - 390
Target Start/End: Original strand, 21390680 - 21390712
Alignment:
Q  358 gcattgcattaatgtaaatgtggttcgacaaat 390  Q
    |||||||||||||||||| ||||||||||||||    
T  21390680 gcattgcattaatgtaaaggtggttcgacaaat 21390712  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 89631 - 89679
Alignment:
Q  197 aaaatacataaatgttcattatattcataagttgttttatgaataagat 245  Q
    |||||| || ||||||||| ||||||||| ||||||||||||| |||||    
T  89631 aaaatatatgaatgttcatcatattcataggttgttttatgaacaagat 89679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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