View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1602_high_20 (Length: 368)

Name: NF1602_high_20
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1602_high_20
NF1602_high_20
[»] chr1 (2 HSPs)
chr1 (32-326)||(17193947-17194232)
chr1 (317-353)||(17193884-17193920)
[»] chr7 (2 HSPs)
chr7 (58-326)||(9653740-9654008)
chr7 (320-353)||(9653677-9653710)
[»] chr4 (2 HSPs)
chr4 (58-326)||(13524765-13525033)
chr4 (320-353)||(13524702-13524735)
[»] chr2 (4 HSPs)
chr2 (61-326)||(19391242-19391503)
chr2 (320-353)||(19391179-19391212)
chr2 (62-119)||(22684895-22684952)
chr2 (133-210)||(22684794-22684870)
[»] scaffold2036 (1 HSPs)
scaffold2036 (82-228)||(375-520)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 32 - 326
Target Start/End: Complemental strand, 17194232 - 17193947
Alignment:
Q  32 tatgattatgattcttttataagtatattttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataattccttgctaa 131  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17194232 tatgattatgattcttttagaagtatattttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataattccttgttaa 17194133  T
Q  132 tgttttatttgttcgttgtttttgttcttagaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcatgagttccttgtgtcttgcatg 231  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  17194132 tgttttatttgttcgttgtttttgttcttagaaatatagcttaaaatcttgtgaaagcactcaccaatccatgtctc--gagttccttgtgtcttgcatg 17194035  T
Q  232 gcacattgcatgaaaaccccttttttctcagcttgtgaatcgattcacaatcatctgaatcgtatgatcgaaagtctctaatttggggtgaatcg 326  Q
    |||||||||||||||||||| |||||||||||      |||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  17194034 gcacattgcatgaaaacccc-tttttctcagc------atcgattcacaatcatctgaatcgtatgatagaaagtctctgatttagggtgaatcg 17193947  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 17193920 - 17193884
Alignment:
Q  317 gggtgaatcgagtcaaattactttgaatcgtatcaat 353  Q
    |||||||| ||||||||||||||||||||||||||||    
T  17193920 gggtgaattgagtcaaattactttgaatcgtatcaat 17193884  T

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Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 58 - 326
Target Start/End: Complemental strand, 9654008 - 9653740
Alignment:
Q  58 attttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataattccttgctaatgttttatttgttcgttgtttttgtt 157  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||  || ||||||||||||| ||||||| ||||    
T  9654008 attttgaagcttgtattgctttaggttcttgttttgatgatgttaggatatagcagtttatagttcctttatattgttttatttgttggttgtttatgtt 9653909  T
Q  158 cttagaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcatgagttccttgtgtcttgcatggca-cattgcatgaaaaccccttttt 256  Q
    || || |||| ||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| || | |   ||||||| |   ||||||||    
T  9653908 ctaagcaatatagcataaaatcttgtgaaagcactcaacaatccatgtctaatgtgttccttgtgtcttggatagaatttttgcatgcatgacccttttt 9653809  T
Q  257 tctcagcttgtgaatcgattcacaatcatctgaatcgtatgatcgaaagtctctaatttggggtgaatcg 326  Q
    ||  ||||||||||||||||||     ||||||||||||| ||| ||||||||| | ||| |||||||||    
T  9653808 tc-aagcttgtgaatcgattcatccaaatctgaatcgtatcatcaaaagtctctgacttgaggtgaatcg 9653740  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 9653710 - 9653677
Alignment:
Q  320 tgaatcgagtcaaattactttgaatcgtatcaat 353  Q
    |||||||||||||||||||||||||||| |||||    
T  9653710 tgaatcgagtcaaattactttgaatcgtttcaat 9653677  T

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Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 58 - 326
Target Start/End: Complemental strand, 13525033 - 13524765
Alignment:
Q  58 attttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataattccttgctaatgttttatttgttcgttgtttttgtt 157  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||  || ||||||||||||| ||||||| ||||    
T  13525033 attttgaagcttgtattgctttaggttcttgttttgatgatgttaggatatagcagtttatagttcctttatattgttttatttgttggttgtttatgtt 13524934  T
Q  158 cttagaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcatgagttccttgtgtcttgcatggca-cattgcatgaaaaccccttttt 256  Q
    || || |||| ||| |||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| || | |   ||||||| |   ||||||||    
T  13524933 ctaagcaatatagcataaaatcttgtgaaagcactcaacaatccatgtctaatgtgttccttgtgtcttggatagaatttttgcatgcatgacccttttt 13524834  T
Q  257 tctcagcttgtgaatcgattcacaatcatctgaatcgtatgatcgaaagtctctaatttggggtgaatcg 326  Q
    ||  ||||||||||||||||||     ||||||||||||| ||| ||||||||| | ||| |||||||||    
T  13524833 tc-aagcttgtgaatcgattcatccaaatctgaatcgtatcatcaaaagtctctgacttgaggtgaatcg 13524765  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 13524735 - 13524702
Alignment:
Q  320 tgaatcgagtcaaattactttgaatcgtatcaat 353  Q
    |||||||||||||||||||||||||||| |||||    
T  13524735 tgaatcgagtcaaattactttgaatcgtttcaat 13524702  T

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Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 61 - 326
Target Start/End: Complemental strand, 19391503 - 19391242
Alignment:
Q  61 ttgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttataattccttgctaatgttttatttgttcgttgtttttgttctt 160  Q
    ||||||||||||||    |||||| ||||||||||||| |||||||||| ||||||||| ||| ||| |||||||      ||| |||||||||||||||    
T  19391503 ttgaagcttgtattagattaggtttttgttttgatgatattaggatataatagtttatagttctttgttaatgttaa----gttggttgtttttgttctt 19391408  T
Q  161 agaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcatgagttccttgtgtcttgcatggcacattgcatgaa-aaccccttttttct 259  Q
    || |||| ||| ||||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||| |||  ||||||||| ||||  |||| |||    
T  19391407 agcaatatagcataaaatcttatgaaagcaatcagcaatccatgtctcatgtgttccttgtgtcttgcatagcattttgcatgaataaccatttttctct 19391308  T
Q  260 cagcttgtgaatcgattcacaatcatctgaatcgtatgatcgaaagtctctaatttggggtgaatcg 326  Q
     ||||||| |||||||||||||| |||| ||||| || ||| ||||||||| | || ||||||||||    
T  19391307 -agcttgtcaatcgattcacaataatcttaatcgcatcatcaaaagtctctgacttagggtgaatcg 19391242  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 19391212 - 19391179
Alignment:
Q  320 tgaatcgagtcaaattactttgaatcgtatcaat 353  Q
    ||||||||||||||||||||||||||||||||||    
T  19391212 tgaatcgagtcaaattactttgaatcgtatcaat 19391179  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 22684952 - 22684895
Alignment:
Q  62 tgaagcttgtattgctataggttcttgttttgatgatgttaggatatagtagtttata 119  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| ||||| | ||||||    
T  22684952 tgaagcttgcattgctttaggttcttgttttaatgatgttaggttatagaaatttata 22684895  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 22684870 - 22684794
Alignment:
Q  133 gttttatttgttcgttgtttttgttcttagaaataaagcttaaaatcttgtgaaagcactcaccaatccatgtctcat 210  Q
    ||||||||| || |||||||| || ||||  |||| ||| ||||||||||| ||||||||||  ||||||||||||||    
T  22684870 gttttatttattggttgtttt-gtacttaacaatatagcataaaatcttgttaaagcactcataaatccatgtctcat 22684794  T

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Target: scaffold2036 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold2036
Description:

Target: scaffold2036; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 375 - 520
Alignment:
Q  82 gttcttgttttgatgatgttaggatatagtagtttataattccttgctaatgttttatttgttcgttgtttttgttcttagaaataaagcttaaaatctt 181  Q
    |||||||||||| |||||||||||||||| |||||||| ||||||  | |||||||||||||| |||||||||  |||||  |||  ||| |||||||||    
T  375 gttcttgttttgctgatgttaggatatag-agtttatagttcctttatgatgttttatttgttggttgtttttactcttatcaatttagcataaaatctt 473  T
Q  182 gtgaaagcactcaccaatccatgtctcatgagttccttgtgtcttgc 228  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  474 gtgaaagcactcagcaatccatgtctcatgtgttccttgtgtcttgc 520  T

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