View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_24 (Length: 346)
Name: NF1602_high_24
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_24 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 47528740 - 47529085
Alignment:
| Q |
1 |
ggtgattggttttgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtg |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47528740 |
ggtgattggttctgtccaacttgttgttgcaaaatatgttgtcgacctaaatgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtg |
47528839 |
T |
|
| Q |
101 |
ttcaatgtgagcagaaatttcactttgggtgtgtaaaggcaacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47528840 |
ttcaatgtgagcagaaatttcactttgggtgtgtaaaggcaacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaa |
47528939 |
T |
|
| Q |
201 |
tatagtttgcgcgaacaggttcatatgtctaaagaagctattgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaat |
300 |
Q |
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| T |
47528940 |
tatagtttgcgtgaacaggttcatatgtctaaagaagctattgtggaaaccaattaaggttgcagacaatctaacttggacactgttgaagaatgtgaat |
47529039 |
T |
|
| Q |
301 |
agtgatgatgatggcagagatttttcttctgatgagtttagtcaaa |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47529040 |
agtgatgatgatggcagagatttttcttctgatgagtttagtcaaa |
47529085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 309
Target Start/End: Original strand, 47523395 - 47523700
Alignment:
| Q |
4 |
gattggttttgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttc |
103 |
Q |
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|||||||| |||||||| ||||||||||||||||| | |||||| ||| | || ||||||||| ||||| |||||| | |||||||||||||||||||| |
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| T |
47523395 |
gattggttctgtccaacatgttgttgcaaaatatgctatcgacccaaatgcaagcaagaatgtgcagatggcaatgacagcaatattcttgtttgtgttc |
47523494 |
T |
|
| Q |
104 |
aatgtgagcagaaatttcactttgggtgtgtaaaggcaacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaatat |
203 |
Q |
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|||||| || || ||||| ||||||||||||||||| |||| || ||| |||||||| ||||| |||| | ||||||||||||||||||||| | | |
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| T |
47523495 |
aatgtgcacaaaagtttcattttgggtgtgtaaaggctttaggacttggatcaagtcacattgagagcaatggtgaaaagaagaattggttttgcagtgt |
47523594 |
T |
|
| Q |
204 |
agtttgcgcgaacaggttcatatgtctaaagaagctattgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaatagt |
303 |
Q |
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| T |
47523595 |
agtttgtggtaacatgttcttatgtctaaagaagttgtcagggaaaccaataacagttgcagctaatctaacttggacattattgaagaatgtgagtaat |
47523694 |
T |
|
| Q |
304 |
gatgat |
309 |
Q |
| |
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|||||| |
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| T |
47523695 |
gatgat |
47523700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 47550543 - 47550601
Alignment:
| Q |
86 |
atattcttgtttgtgttcaatgtgagcagaaatttcactttgggtgtgtaaaggcaaca |
144 |
Q |
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| T |
47550543 |
atattcttgcttgtgttcaatgtgaacgaaaatttcactttgggtgtgcaaaggcaaca |
47550601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 44871058 - 44870714
Alignment:
| Q |
1 |
ggtgattggttttgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtg |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| | |||||| ||| | |||||||||||| ||||| |||||| |||||| ||||||| |||| |
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| T |
44871058 |
ggtgattggttctgtccaacttgttgttgcaaaatatgctatcgacccaaatgcaaacaagaatgtgcagatggcaatgaaaacaattttcttgtatgtg |
44870959 |
T |
|
| Q |
101 |
ttcaatgtgagcagaaatttcactttgggtgtgtaaaggcaacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaa |
200 |
Q |
| |
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| ||||||||||| |||||||||||||||||||||||| | ||| ||| || ||||||||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
44870958 |
tacaatgtgagcaaaaatttcactttgggtgtgtaaagactacaagatttggatctagtcacacagagagcaatattaaaaagaagaattggttttgcag |
44870859 |
T |
|
| Q |
201 |
tatagtttgcgcgaacaggttcatatgtctaaagaagctattgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaat |
300 |
Q |
| |
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| ||||||| | ||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| | |
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| T |
44870858 |
tgtagtttgtgggaacatgttcttatgtctaaagaagctattggggaaaccaattaaggttgcagataatataaattggacattgttgaagaatgtgagt |
44870759 |
T |
|
| Q |
301 |
agtgatgatgatggcagagatttttcttctgatgagtttagtcaa |
345 |
Q |
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||||| |||||||| |||||||| ||||| |||||||||||||| |
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| T |
44870758 |
agtgacgatgatggtggagattttacttctaatgagtttagtcaa |
44870714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 9820175 - 9819883
Alignment:
| Q |
1 |
ggtgattggttttgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtg |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| | |||||| ||| | ||||||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
9820175 |
ggtgaatggttctgtccaacttgttgttgcaaaatatgctatcgacccaaatgcaaacaagaatgtaaagatcacaaggataacaatattcttgtttgtg |
9820076 |
T |
|
| Q |
101 |
ttcaatgtgagcagaaatttcactttgggtgtgtaaaggcaacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaa |
200 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||||| |||| ||||| || |||||||| ||||||||||||||| |
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| T |
9820075 |
ttcaatgtgagcaaaaatatcactttggatgtgtaaaggctgtaggaattgaatttaatcacatgg------------------agaattggttttgcag |
9819994 |
T |
|
| Q |
201 |
tatagtttgcgcgaacaggttcatatgtctaaagaagctattgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaat |
300 |
Q |
| |
|
| | ||||| | ||||| |||| |||||||||||||| | || | |||||||||||||||||||||||| |||| |||||| || |||||||||||| | |
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|
| T |
9819993 |
tgtggtttgtgggaacatgttcttatgtctaaagaagttgttaggaaaaccaattaaggttgcagataatttaacatggacattggtgaagaatgtgagt |
9819894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 9853805 - 9854097
Alignment:
| Q |
1 |
ggtgattggttttgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtg |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| | |||||| ||| | ||||||||||||| |||| ||| |||||||||||||||||||||| |
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| T |
9853805 |
ggtgaatggttctgtccaacttgttgttgcaaaatatgctatcgacccaaatgcaaacaagaatgtaaagatcacaaggataacaatattcttgtttgtg |
9853904 |
T |
|
| Q |
101 |
ttcaatgtgagcagaaatttcactttgggtgtgtaaaggcaacaggatatgaatctagtcacatggagagtaatgttaaaaagaagaattggttttgcaa |
200 |
Q |
| |
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||||||||||||| |||| ||||||||| || |||||||| |||| ||||| || |||||||| ||||||||||||||| |
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| T |
9853905 |
ttcaatgtgagcaaaaatatcactttggatgcgtaaaggctgtaggaattgaatttaatcacatgg------------------agaattggttttgcag |
9853986 |
T |
|
| Q |
201 |
tatagtttgcgcgaacaggttcatatgtctaaagaagctattgtggaaaccaattaaggttgcagataatctaacttggacactgttgaagaatgtgaat |
300 |
Q |
| |
|
| | ||||| | ||||| |||| |||||||||||||| | || | |||||||||||||||||||||||| |||| |||||| || |||||||||||| | |
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|
| T |
9853987 |
tgtggtttgtgggaacatgttcttatgtctaaagaagttgttaggaaaaccaattaaggttgcagataatttaacatggacattggtgaagaatgtgagt |
9854086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 21062074 - 21062204
Alignment:
| Q |
2 |
gtgattggttttgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgt |
101 |
Q |
| |
|
|||||| |||| ||||||||||| | ||||||||||||| || ||| || | |||||||| ||| || || ||||||||||||||||||| ||||| |
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|
| T |
21062074 |
gtgattagtttcgtccaacttgtggctgcaaaatatgttatcaaccaaagtgcaaacaagagtgtgcaaatggtaatgataacaatattcttgcgtgtgt |
21062173 |
T |
|
| Q |
102 |
tcaatgtgagcagaaatttcactttgggtgt |
132 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |
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|
| T |
21062174 |
tcaatgtgagcaaaaatttcaatttgggtgt |
21062204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 21081467 - 21081597
Alignment:
| Q |
2 |
gtgattggttttgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgt |
101 |
Q |
| |
|
|||||| |||| ||||||||||| | ||||||||||||| || ||| || | |||||||| ||| || || ||||||||||||||||||| ||||| |
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| T |
21081467 |
gtgattagtttcgtccaacttgtggctgcaaaatatgttatcaaccaaagtgcaaacaagagtgtgcaaatggtaatgataacaatattcttgcgtgtgt |
21081566 |
T |
|
| Q |
102 |
tcaatgtgagcagaaatttcactttgggtgt |
132 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| |
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| T |
21081567 |
tcaatgtgagcaaaaatttcaatttgggtgt |
21081597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 21080811 - 21080674
Alignment:
| Q |
1 |
ggtgattggttttgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtg |
100 |
Q |
| |
|
||||||||||| | || || |||||||||||||||||| | |||||||||| | |||| ||||||| || || ||| | ||||| ||| ||||||||| |
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| T |
21080811 |
ggtgattggttctttcgaatttgttgttgcaaaatatgctatcgacctaaatgaaaaccagaatgtgcatatggaaatcaaaacaacatt-ttgtttgtg |
21080713 |
T |
|
| Q |
101 |
ttcaatgtgagcagaaatttcactttgggtgtgtaaaggc |
140 |
Q |
| |
|
|||||||| | | || ||||||||||||||||||||||| |
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| T |
21080712 |
atcaatgtgtg-aaaattttcactttgggtgtgtaaaggc |
21080674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 21061415 - 21061289
Alignment:
| Q |
4 |
gattggttttgtccaacttgttgttgcaaaatatgttgtcgacctaaacgtaaacaagaatgtacagataccaatgataacaatattcttgtttgtgttc |
103 |
Q |
| |
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|||||||| | || || |||||||||||||||||| | |||||||||| | |||| ||||||| || || ||| | ||||| ||| ||||||||| || |
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| T |
21061415 |
gattggttctttcgaatttgttgttgcaaaatatgctatcgacctaaatgaaaaccagaatgtgcatatggaaatcaaaacaacatt-ttgtttgtgatc |
21061317 |
T |
|
| Q |
104 |
aatgtgagcagaaatttcactttgggtgt |
132 |
Q |
| |
|
|||||| | | || ||||||||||||||| |
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|
| T |
21061316 |
aatgtgtg-aaaattttcactttgggtgt |
21061289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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