View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_27 (Length: 334)
Name: NF1602_high_27
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 46 - 326
Target Start/End: Complemental strand, 31219254 - 31218974
Alignment:
| Q |
46 |
tttaccttctgaaaatgcagtcgactttgcgacaatcaattttctggaactatacctgatttcattcagagctggacaattcttgagaggatgtgtgaac |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31219254 |
tttaccttctgaaaatgcagtcgactttgcgacaatcaattttctggaactatacctcatttcattcagaactggacaattcttgagaggatgtgtgaac |
31219155 |
T |
|
| Q |
146 |
cttttctttcttcttgtgaaactctaaatcataannnnnnnncttagttaagctggtttgtcaaaataataacttttaattttgacagggtgatgcaagg |
245 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219154 |
cttttctttcttcttgtgaaattctaaatcataattttttttcttagttaagctggtttgtcaaaataataacttttaattttgacagggtgatgcaagg |
31219055 |
T |
|
| Q |
246 |
gagtggtttgagtggtccaattccttctggaattttaaatctgaaaaacctcactgacttgtaagtatgatgtattttctt |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31219054 |
gagtggtttgagtggtccaattccttctggaattttaaatctgaaaaacctcactgacttgtaagtatgatgtattttctt |
31218974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 31200661 - 31200347
Alignment:
| Q |
14 |
tgttcatatcaaccgtaatatcatattcattgt--ttaccttctgaaaatgcagtcgactttgcgacaatcaattttctggaactatacctgatttcatt |
111 |
Q |
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|
||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31200661 |
tgttcatatgaaccgtaatatcttattcattgtgtttaccttctgaaaatgcagtcgactttgtgacaatcaattttctggaactatacctgatttcatt |
31200562 |
T |
|
| Q |
112 |
cagagctggacaattcttgagaggatgtgtgaaccttttctttcttcttgtgaaactctaaatcataannnnnnnncttagttaagctggtttgtcaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| |
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| T |
31200561 |
cagagctggacaattcttgagaggatgtgtgaaccttttctttcttcttgcgaaattctaaatcataattttttttcttagttaagctggtttgtcaaaa |
31200462 |
T |
|
| Q |
212 |
taataacttttaattttgacagggtgatgcaagggagtggtttgagtggtccaattccttctggaattttaaatctgaaaaacctcactgacttgtaagt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||||||||| |
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| T |
31200461 |
taataacttttaattttgacagggtgatgcaagggagtggtttgagtggtccaattccttctggaatttcatatctgaaaaacctcaatggcttgtaagt |
31200362 |
T |
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| Q |
312 |
atgatgtattttctt |
326 |
Q |
| |
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||||||||||||||| |
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| T |
31200361 |
atgatgtattttctt |
31200347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 31181636 - 31181306
Alignment:
| Q |
1 |
acattcattctattg---ttcatatcaaccgtaatatcatattcattgt--ttaccttctgaaaatgcagtcgactttgcgacaatcaattttctggaac |
95 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31181636 |
acattcattctattgatgttcatatgaaccgtaatatcttattcattgtgtttaccttctgaaaatgcagtcgactttgtgacaatcaattttctggaac |
31181537 |
T |
|
| Q |
96 |
tatacctgatttcattcagagctggacaattcttgagaggatgtgtgaacc-ttttctttcttcttgtgaaactctaaatcataannnnnnnncttagtt |
194 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||| |||||||||||| ||||||| |
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| T |
31181536 |
tataccttatttcattcagagctggacaattcttgagagaatgtgtgaacctttttgtttcttctcgtgaaattctaaatcataattttttttcttagtt |
31181437 |
T |
|
| Q |
195 |
aagctggtttgtcaaaataataacttttaattttgacagggtgatgcaagggagtggtttgagtggtccaattccttctggaattttaaatctgaaaaac |
294 |
Q |
| |
|
|||||||||||| ||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |
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| T |
31181436 |
aagctggtttgttgaaagaattgcttttaa-tttgacagggtgatgcaagggagtgggttgagtggtccaattccttctggaatttcatatctgaaaaac |
31181338 |
T |
|
| Q |
295 |
ctcactgacttgtaagtatgatgtattttctt |
326 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
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|
| T |
31181337 |
ctcaatgacttgtaagtatgatgtattttctt |
31181306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 188 - 326
Target Start/End: Complemental strand, 31192480 - 31192342
Alignment:
| Q |
188 |
cttagttaagctggtttgtcaaaataataacttttaattttgacagggtgatgcaagggagtggtttgagtggtccaattccttctggaattttaaatct |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
31192480 |
cttagttaagctggtttgtcaaaataataacttttaattttgacagggtgatgcaagggagtggtttgagtggtccaattccttctggaatttcatatct |
31192381 |
T |
|
| Q |
288 |
gaaaaacctcactgacttgtaagtatgatgtattttctt |
326 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |
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| T |
31192380 |
gaaaaacctcaatggcttgtaagtatgatgtattttctt |
31192342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 31246570 - 31246451
Alignment:
| Q |
47 |
ttaccttctgaaaatgcagtcgactttgcgacaatcaattttctggaactatacctgatttcattcagagctggacaattcttgagaggatgtgtgaacc |
146 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| |||||| || |||||||||| ||| ||||| |
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| T |
31246570 |
ttaccgtctaaaaatgcagtcgacttggcgacaatcaattctctggaactttacctgatttcattcaaagctgggaaagtcttgagaggctgtatgaact |
31246471 |
T |
|
| Q |
147 |
ttttctttcttcttgtgaaa |
166 |
Q |
| |
|
|||| |||||| |||||||| |
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|
| T |
31246470 |
ttttatttcttgttgtgaaa |
31246451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 228 - 318
Target Start/End: Complemental strand, 31246373 - 31246283
Alignment:
| Q |
228 |
tgacagggtgatgcaagggagtggtttgagtggtccaattccttctggaattttaaatctgaaaaacctcactgacttgtaagtatgatgt |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||| |||||||||||| ||||| |
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|
| T |
31246373 |
tgacagggttatgcaagggagtggtttgagtggaccaattccttctggaatttcatatctaaaaaacctcaccgacttgtaagtaagatgt |
31246283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 31234719 - 31234624
Alignment:
| Q |
57 |
aaaatgcagtcgactttgcgacaatcaattttctggaactatacctgatttcattcagagctggacaattcttgagaggatgtgtgaaccttttct |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| |||| ||| |||||| ||| ||| |||||||||||| |
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|
| T |
31234719 |
aaaatgcagtcgacttggcgacaatcaattctctggaactatacctgatttgattcagaactgggcaagtcttgaaaggctgtatgaaccttttct |
31234624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 31234542 - 31234449
Alignment:
| Q |
219 |
ttttaattttgacagggtgatgcaagggagtggtttgagtggtccaattccttctggaattttaaatctgaaaaacctcactgacttgtaagta |
312 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||| | |||| ||||||||||| || ||||||||| |
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|
| T |
31234542 |
ttttaattgtgacagggttatgcaagggagtggtttgagtggcccagttccttcgggaatttcatatctaaaaaacctcaccgatttgtaagta |
31234449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 31375503 - 31375455
Alignment:
| Q |
76 |
gacaatcaattttctggaactatacctgatttcattcagagctggacaa |
124 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
31375503 |
gacaatcaattctctggaaagatacctgattttattcagaactggacaa |
31375455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 20997725 - 20997799
Alignment:
| Q |
241 |
caagggagtggtttgagtggtccaattccttctggaattttaaatctgaaaaacctcactgacttgtaagtatga |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | | |||| |||||||||||||||||||||||| |
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|
| T |
20997725 |
caagggagtggtttgagtgggccaattccttctggaatttcacttttgaagaacctcactgacttgtaagtatga |
20997799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 21013638 - 21013564
Alignment:
| Q |
241 |
caagggagtggtttgagtggtccaattccttctggaattttaaatctgaaaaacctcactgacttgtaagtatga |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | | |||| |||||||||||||||||||||||| |
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|
| T |
21013638 |
caagggagtggtttgagtgggccaattccttctggaatttcacttttgaagaacctcactgacttgtaagtatga |
21013564 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 36213481 - 36213407
Alignment:
| Q |
242 |
aagggagtggtttgagtggtccaattccttctggaattttaaatctgaaaaacctcactgacttgtaagtatgat |
316 |
Q |
| |
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|||||||||| || ||||| ||||||||||||||||||| ||| || |||| | ||||||||||| ||||||| |
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|
| T |
36213481 |
aagggagtggattaagtgggccaattccttctggaatttcaaaattggaaaaattaactgacttgtatgtatgat |
36213407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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