View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_29 (Length: 305)
Name: NF1602_high_29
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_29 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 36995665 - 36995954
Alignment:
| Q |
16 |
aaagtttagctgtgatcatcaactcatcgtgaataagaaaaacgctgcggaaccttttgcttgaaacaagtcagtccaaagctaaaattgagtgaatcat |
115 |
Q |
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| T |
36995665 |
aaagtttagctgtgatcatcaactcatcgtgaataagaaaaacgctgcggaaccttttgcttgaaacaagtcagtccaaagctaaaattgagtgaatcat |
36995764 |
T |
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| Q |
116 |
ctatctgtatgttctgtcaagatttcatataaatatgatgaaataaagttaaagctgcttgtttgaatttgttgcatacannnnnnnnnnnaaaggaaat |
215 |
Q |
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| T |
36995765 |
ctatctgtatgttctgtcaagatttcatataaatatgatgaaataaagttaaagctgcttgtttgaatttgttgcatacatttttttttttaaaggaaat |
36995864 |
T |
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| Q |
216 |
tgttacatacatcgttaggtatacgacaacattttaaaatatatgtcgtcaactttaaatgtaaattgaattgcatgatgtatttttctc |
305 |
Q |
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| T |
36995865 |
tgttacatacatcgttaggtatacgacaacattttaaaatatatgtcgtcaactttaaatgtaaattgaattgcatgatgtatttttctc |
36995954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 36990280 - 36990344
Alignment:
| Q |
241 |
acaacattttaaaatatatgtcgtcaactttaaatgtaaattgaattgcatgatgtatttttctc |
305 |
Q |
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|||||| | |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
36990280 |
acaacaatataaaatatatgtcggcaactttaaatgtaaattgaattgcatgatttatttttctc |
36990344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 36990518 - 36990560
Alignment:
| Q |
252 |
aaatatatgtcgtcaactttaaatgtaaattgaattgcatgat |
294 |
Q |
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| T |
36990518 |
aaatatatgtcggcaactttaaatgtaaattgaattgcatgat |
36990560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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