View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_34 (Length: 281)
Name: NF1602_high_34
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 33027452 - 33027685
Alignment:
| Q |
1 |
cccaaagttatggttaataatcattgatacttgttccatttatgcttattcgtaaacgcatgaaaaccattaagaataaaattaatagaataaaatacga |
100 |
Q |
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| T |
33027452 |
cccaaagttatggttaataatcattgatacttgttccatttatgcttattcgtaaacgcataaaaaccattacgaataaaattattataataaaatacaa |
33027551 |
T |
|
| Q |
101 |
aagtaatcaaatgaagtcataaaat-gttcaaatttacatgatcaaacaatcagtgaagtttttctttgatgacctgacctagaattaacc----attgt |
195 |
Q |
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| T |
33027552 |
aagtaatcaaatgaagtcataaaatggtttaaattta-atgatcaaacaataagtgaagtttttctttgatgacctaacctagaattaaccattaattgt |
33027650 |
T |
|
| Q |
196 |
ggttcataaacataaactaatgaatatgaataaag |
230 |
Q |
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| T |
33027651 |
ggttcataaacataaactaatgaatatgaataaag |
33027685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 27128107 - 27128137
Alignment:
| Q |
198 |
ttcataaacataaactaatgaatatgaataa |
228 |
Q |
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| T |
27128107 |
ttcataaacataaactaatgaatatgaataa |
27128137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 35948369 - 35948409
Alignment:
| Q |
69 |
attaagaataaaattaatagaataaaatacgaaagtaatca |
109 |
Q |
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| T |
35948369 |
attaagaatacaattaattgaataaaatacaaaagtaatca |
35948409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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