View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_36 (Length: 273)
Name: NF1602_high_36
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 35340232 - 35340497
Alignment:
| Q |
9 |
gagatgaagcagccgcaagccttttatattaactaactcgatcggtatctctcctgtaagaagattctctgaaaaatcaatctcaattgcaacagaaagg |
108 |
Q |
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| T |
35340232 |
gagatgaagcagccgcaagccttttatattaaccaactcgatcggtatctctcctgtaagaagattctctgaaaaatcaatttcaattgcaacagaaagg |
35340331 |
T |
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| Q |
109 |
tttccaatctcccttggaatatttcctgtcaactcattcctgtaaa-ggtatagcttctttaggacttcaaggtttccaagctcctttggaattgatccc |
207 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35340332 |
tttccaatctcccttggaatattacctgtcaactcattcctgtaaagggtatagtttctttaggacatcaaggtttccaagctcctttggaattgatccc |
35340431 |
T |
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| Q |
208 |
acaagcttgttctgataaagagcaagaatctccaaatttgtacagtttccaagctctttaggtata |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35340432 |
acaagcttgttctgataaagagcaagaatctccaaatttgtacagtttccaagctctttaggtata |
35340497 |
T |
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