View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1602_high_38 (Length: 267)
Name: NF1602_high_38
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 46121928 - 46122177
Alignment:
| Q |
1 |
tgttgagagagggggcaaaatcttaaagaaataacaatccataaaaatctaatgttttcttgctaaaatttaaatttaagattccacaaaatccaatttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
46121928 |
tgttgagagagggggcaaaatcttaaagaaataacaatccataaaaatctaatgttttcttgctaaaattttactttaagatttcacaaaatccaatttg |
46122027 |
T |
|
| Q |
101 |
ttaaacaatccctcgaaattagatatannnnnnnnatcaacacaactttttttaaaatacaaatagtcttaattgaatnnnnnnnnntatcataaaaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
46122028 |
ttaaacaatccctcgaaattagatatattttttttatcaacacaactttttttaaaatacaaatagtcttaattgaat-------------acaaaaaat |
46122114 |
T |
|
| Q |
201 |
aagctttttaaatcctgtaaatcaccaaataccatcctccgtttttaaaatttgtacctatgc |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
46122115 |
aagctttttaaatcctgtaaatcaccaaattccatcccccgtttttaaaatttgtacctatgc |
46122177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 120
Target Start/End: Original strand, 1152179 - 1152212
Alignment:
| Q |
87 |
caaaatccaatttgttaaacaatccctcgaaatt |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
1152179 |
caaaatccaatttattaaacaatccctcgaaatt |
1152212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 30385130 - 30385166
Alignment:
| Q |
84 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
30385130 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
30385166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 31067625 - 31067589
Alignment:
| Q |
84 |
ccacaaaatccaatttgttaaacaatccctcgaaatt |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
31067625 |
ccacaaaatccaatttattaaacaatccttcgaaatt |
31067589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University