View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_4 (Length: 519)
Name: NF1602_high_4
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 18306163 - 18306544
Alignment:
| Q |
13 |
gagatgtattgaatgttggtagtatttggtgaggaggggaggaagattttgatggagag--ttccatgatggtgatttgatatgaattttcctacttcta |
110 |
Q |
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| T |
18306163 |
gagatgtattgaatgttggtagtatttggtgaggaggggaggaatattttgatggagagagtttcatgatggtgatttgatatgaattttccaagctcta |
18306262 |
T |
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| Q |
111 |
ccgttgggacaaggtgtcctcttcccatgactggatat-gaattatagtgtccannnnnnnn--ctttgttttctttgagatagatcaaaggttaatggt |
207 |
Q |
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| T |
18306263 |
ccattgggacaaggtgtcctcttcccatggctggatatagaattatagtgtccatttttttttcctttgttttctttgagataaatcaaaggttaatggt |
18306362 |
T |
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| Q |
208 |
atgtgaaaggtttatgttaaattaaaaatttgtctttgaagatgatggagatatgataggttttatgagaattttaaagttgtggaagaaatgtgaattt |
307 |
Q |
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| T |
18306363 |
atttgaatggtttatgtttgattaagaatttgtctttgaagatgatggagatatgataggttttatgagaattttaaagttgtggaagaaatgtgaattt |
18306462 |
T |
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| Q |
308 |
ctttcaacaaattccttttttaccgcatgttttccacaaatttcagaattataccgctatttctttttattaattatttaaa |
389 |
Q |
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| T |
18306463 |
ctttcaacaaattccttttttaccgcatgttttccacaaattttggaattataccgctttttctttttattaattatttaaa |
18306544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 365 - 430
Target Start/End: Complemental strand, 32100486 - 32100421
Alignment:
| Q |
365 |
tatttctttttattaattatttaaaatgttttaaatatagctccactttatgacaaagagaaacaa |
430 |
Q |
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| T |
32100486 |
tattcctttttattaattatttaaaatgttttaaatatagctccatgttataagaaagagaaacaa |
32100421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 31754878 - 31754820
Alignment:
| Q |
372 |
ttttattaattatttaaaatgttttaaatatagctccactttatgacaaagagaaacaa |
430 |
Q |
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| T |
31754878 |
ttttattaattatttaaaatgttttaaaaatacctccactttataagaaagagaaacaa |
31754820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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