View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_45 (Length: 234)
Name: NF1602_high_45
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3734316 - 3734099
Alignment:
| Q |
1 |
caaattcctctgtcaaatgtatccannnnnnnnncttcttatgtgactttggaaaatatatgttaattatatactaatcacttaccaatgaagtattaat |
100 |
Q |
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| T |
3734316 |
caaattcctcggtcaaatgtatccatttttttttcttcttatgcgactttggaaaatatatgttaattatatactaatcacttaccaatgaagtattaat |
3734217 |
T |
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| Q |
101 |
gtttgtctattatattaaagaactcctaatgtataatagaacatgtttcacgcatacaaattatacgaatttacgttgatgcatgttgaattgatgtttt |
200 |
Q |
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| T |
3734216 |
gtttgtctattatattaaagaactcctaatgtataatagaacatgtttcacgcatacaaattatacgaatttacgttgatgcatgttgaattgatgtttt |
3734117 |
T |
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| Q |
201 |
tgcatttgattgagtttt |
218 |
Q |
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|||||||||||||||||| |
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| T |
3734116 |
tgcatttgattgagtttt |
3734099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 3733820 - 3733886
Alignment:
| Q |
49 |
ttggaaaa-tatatgttaattatatactaatcacttaccaatgaagtattaatgtttgtctattatat |
115 |
Q |
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| T |
3733820 |
ttggaaaagtatattttaattatatacttatcacttaccaatg-agaattaatgtttgtctattatat |
3733886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 3733938 - 3733972
Alignment:
| Q |
57 |
tatatgttaattatatactaatcacttaccaatga |
91 |
Q |
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| T |
3733938 |
tatatgttaattatatacttatcacttaccaatga |
3733972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 33641682 - 33641602
Alignment:
| Q |
133 |
ataatagaacatgtttcacgcatacaaattatacgaatttacgttgatgcatgttgaattgatgtttttgcatttgattga |
213 |
Q |
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| T |
33641682 |
ataatagaacatgtttcatgcataaaaattataagattttatgttaatgcatgttgaattgatgtgtttgcatttgattga |
33641602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 26187706 - 26187628
Alignment:
| Q |
133 |
ataatagaacatgtttcacgcatacaaattatacgaatttacgttgatgcatgttgaattgatgtttttgcatttgattga |
213 |
Q |
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|||||||||||| ||||| || || |||||||| |||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
26187706 |
ataatagaacatatttcatgcttaaaaattataagaattttggttgatgcatgttgaat--atgtgtttgcatttgattga |
26187628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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