View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_48 (Length: 219)
Name: NF1602_high_48
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 12005235 - 12005042
Alignment:
| Q |
15 |
caaaggatcaatattaataagaagatannnnnnngaaataaccaatattaataattaattgttagattaatattttcctacttcgcttgagtttgaatct |
114 |
Q |
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| T |
12005235 |
caaaggatcaatgttaataagaagatatttttttgaaacaaccaatattaataattaattgttagattaatattttcctacttcgctcgagtttgaatct |
12005136 |
T |
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| Q |
115 |
gggacctccaattcctgtaacttttagctcaaaccagttgagttacctga-cctcgcaataagaagatgttgacatatctaaccatgtttttga |
207 |
Q |
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| T |
12005135 |
gggacctccaattcctgtaactcttagctcaaaccagttgagttacctgaccctcgcaataagaagatgttgacatatccaaccatgtttttga |
12005042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 15956445 - 15956478
Alignment:
| Q |
57 |
caatattaataattaattgttagattaatatttt |
90 |
Q |
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| T |
15956445 |
caatattaataattagttgttagattaatatttt |
15956478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 38020431 - 38020371
Alignment:
| Q |
105 |
gtttgaatctgggacctccaattcctgtaacttttagctcaaaccagttgagttacctgacc |
166 |
Q |
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| T |
38020431 |
gtttgaaccttggacctccaactcct-taacccttagctcaaaccagttgagctacctgacc |
38020371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 10156371 - 10156339
Alignment:
| Q |
58 |
aatattaataattaattgttagattaatatttt |
90 |
Q |
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| T |
10156371 |
aatattaatagttaattgttagattaatatttt |
10156339 |
T |
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