View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_high_49 (Length: 218)
Name: NF1602_high_49
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 43247363 - 43247554
Alignment:
| Q |
13 |
gtcctagatatattatatactccaatttggaccatgtaaa-ccaggtaagtaggtacgtgttcatagaatgcacttaatataacatattcaacttaagac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43247363 |
gtcctagatatattatatactccaatttggaccatgtaaaaccaggtaagtaggtacgtgttcatagaatgcacttaatataacatattcaacttaagac |
43247462 |
T |
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| Q |
112 |
atgtatagaatcaaaagcatgtacttgacccaaag-nnnnnnnnnnnntcaagcatgtatagtctacggaaatcataaaacagttacaaatc |
202 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43247463 |
atgtatagaatcaaaagcatgtacttgacccaaagaaaaataaaaaaatcaagcatgtatagtctacggaaatcataaaacagttacaaatc |
43247554 |
T |
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