View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1602_low_1 (Length: 1040)
Name: NF1602_low_1
Description: NF1602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1602_low_1 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 990; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 990; E-Value: 0
Query Start/End: Original strand, 18 - 1035
Target Start/End: Complemental strand, 8317411 - 8316394
Alignment:
| Q |
18 |
aaaaggaatgcgttctgtttcaggaaaacttggcttacaaatgatttcagctgaatcaaaagacaggaaaccatgatcgaacaaatgaattagttgtgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317411 |
aaaaggaatgcgttctgtttcaggaaaacttggcttacaaatgatttcagctgaatcaaaagacaggaaaccatgatcgaacaaatgaattagttgtgct |
8317312 |
T |
|
| Q |
118 |
gtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgcataataaaattcaatgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8317311 |
gtaccatacccagagtaagtgaattgcttgagatgcaaagcattgaatttgatggattggctatgtaggtcatgggatgccgcattataaaattcaatgt |
8317212 |
T |
|
| Q |
218 |
cttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaagtgg |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317211 |
cttgttctatggaaacaatttcaagtagaggagcttctacaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaagtgg |
8317112 |
T |
|
| Q |
318 |
taaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctggga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8317111 |
taaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctggga |
8317012 |
T |
|
| Q |
418 |
aattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagctgat |
517 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8317011 |
aattttatggtggaggacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaaggggagctgat |
8316912 |
T |
|
| Q |
518 |
aaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaa |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8316911 |
aaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaa |
8316812 |
T |
|
| Q |
618 |
agaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctttttacctgattctattttc |
717 |
Q |
| |
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| T |
8316811 |
agaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctttttacctgattctattttc |
8316712 |
T |
|
| Q |
718 |
atcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgattgccgcaaacatgacaccttggacatacag |
817 |
Q |
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| T |
8316711 |
atcccgctctcaaaatctatctccacacgcctttcatatacttctgcatcgcgcaaattggctttatgatttccgcaaacatgacaccttggacatacag |
8316612 |
T |
|
| Q |
818 |
tcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataacaagagggagaaaactaacc |
917 |
Q |
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| T |
8316611 |
tcaatttatactgcatccaaaatcatcagagttacttaatttatcatcaatgttttggggtggactatcaaataagataacaagagggagaaaactaacc |
8316512 |
T |
|
| Q |
918 |
ttatcatagtcatagcaataatcagtgcaaatttcttcacaataagaacacaatggattataattgtatgataaatcaatatcatctaagtcgagcttgg |
1017 |
Q |
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| T |
8316511 |
ttatcatagtcatagcaataatcagtgcaaatttcttcgcaataagaacacaatggattataattgtatgataaatcaatatcatctaagtcgagcttgg |
8316412 |
T |
|
| Q |
1018 |
taatggatgatgtccatc |
1035 |
Q |
| |
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| T |
8316411 |
tgatggatgatgtccatc |
8316394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 8358987 - 8359072
Alignment:
| Q |
216 |
gtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaa |
301 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||| || ||||||||||||| ||| ||||| |||||||||| ||||||| |
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| T |
8358987 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
8359072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 215 - 592
Target Start/End: Original strand, 1745 - 2125
Alignment:
| Q |
215 |
tgtcttgttctatggaaacaatttcaagtagaggagcttctaaaataagatcttttccacccgaccaattgcagtttttgatatcaaactttctaagaag |
314 |
Q |
| |
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|||||||| ||||||||||| |||||||||| | |||| || ||||| || ||||||| |||| ||| |||||| |||| ||||||||| | | ||| |
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| T |
1745 |
tgtcttgtcctatggaaacagtttcaagtagggaggcttgtacaataacatattttccattcgactaatggcagttactgatctcaaacttttttacaag |
1844 |
T |
|
| Q |
315 |
tggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaacttgaggagttttaggtgtccaaaatgaacagaaatgctg |
414 |
Q |
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| T |
1845 |
cggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagttgagaaattttagctgttgaaaatgaagagaggtagag |
1944 |
T |
|
| Q |
415 |
ggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaagagcagaaaagaggagct |
514 |
Q |
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|||||||||||||| ||| |||| | || ||| |||| ||||| || || | || ||||||||||| ||||||| || ||||||| |||| | |
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| T |
1945 |
ggaaattttatggtagagtacactttaagccgcaactctagttcttgcaatgaagaagagccgaaaagataatcagatgtactaggagaaaaggggagtt |
2044 |
T |
|
| Q |
515 |
gataaaaagatgaatggatccgaagaatttttactctcc---gattcaagatgctagagatccaagtattttgaagggata |
592 |
Q |
| |
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||||||| |||||||||||| |||| | || ||||||| |||||||||| |||||||||| ||||||||||| |||| |
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| T |
2045 |
tataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatccatgtattttgaagtgata |
2125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 403
Target Start/End: Original strand, 28111434 - 28111560
Alignment:
| Q |
277 |
gaccaattgcagtttttgatatcaaactttctaagaagtggtaaattaagggtcaaacagtcgctagaggtatcaatcttaaaaaagatcccatacaact |
376 |
Q |
| |
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||||||| |||||| |||| ||||||||| ||| ||| |||||||||||| ||| | |||| ||||||| |||||| | |||||||| |||||||| | |
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| T |
28111434 |
gaccaatggcagttactgatctcaaactttttaacaagcggtaaattaaggttcatagagtcactagagggatcaatgtcaaaaaagactccatacaagt |
28111533 |
T |
|
| Q |
377 |
tgaggagttttaggtgtccaaaatgaa |
403 |
Q |
| |
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|||||| ||| || ||| |||||||| |
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| T |
28111534 |
tgaggaatttcagctgttgaaaatgaa |
28111560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 559 - 632
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
559 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
632 |
Q |
| |
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||||||||||||||||| ||||||||||| |||| | ||| ||||||| ||||| |||||||| ||||||| |
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| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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